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sw_6_scaffold_384

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_6_scaffold_384_1
unknown

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comp(2..91)
DNA (90bp) protein (30aa)

This feature has no annotations

sw_6_scaffold_384_2

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comp(688..1854)
DNA (1167bp) protein (389aa)
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase n=1 Tax=halophilic archaeon DL31 RepID=G2MG86_9ARCH
acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:AEN05980.1}; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_6_scaffold_384_3
Haloquadratum sp. J07HQX50, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(1857..2612)
DNA (756bp) protein (252aa)
livF3; branched-chain amino acids ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein id=24624512 bin=Haloquadratum_J07HQX50 species=Haloquadratum sp. J07HQX50 genus=Haloquadratum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Haloquadratum_J07HQX50
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:ERG99900.1}; TaxID=1238426 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloqua
livF3; ABC-type transport system ATP-binding protein (probable substrate branched-chain amino acids)
sw_6_scaffold_384_4
Halobiforma nitratireducens, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(2609..3334)
DNA (726bp) protein (242aa)
Amino acid/amide ABC transporter ATP-binding protein 1, haat family n=1 Tax=Halobiforma nitratireducens JCM 10879 RepID=M0MM56_9EURY
Amino acid/amide ABC transporter ATP-binding protein 1, haat family {ECO:0000313|EMBL:EMA46453.1}; TaxID=1227454 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma
amino acid/amide ABC transporter ATP-binding protein 1, HAAT family
sw_6_scaffold_384_5
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3331..4335)
DNA (1005bp) protein (335aa)
ABC transporter integral membrane subunit; K01998 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
ABC-type transport system permease protein II (Probable substrates branched-chain/neutral amino acids) 2 id=3209648 bin=GWC2_Methylomirabilis_70_24 species=Marinobacter sp. ELB17 genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative ABC-type branched-chain amino acid transport system, permease component
sw_6_scaffold_384_6
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4341..5216)
DNA (876bp) protein (292aa)
branched-chain amino acid ABC transporter permease; K01997 branched-chain amino acid transport system permease protein Tax=RBG_13_Deltaproteobacteria_47_9_curated
branched-chain amino acid ABC transporter, membrane protein; K01997 branched-chain amino acid transport system permease protein id=14625354 bin=bin7_NC10_sister species=Bacillus sp. ZYK genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
branched-chain amino acid ABC transporter membrane protein
sw_6_scaffold_384_7
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5274..6602)
DNA (1329bp) protein (443aa)
extracellular ligand-binding receptor Tax=RBG_13_Deltaproteobacteria_52_11b_curated
ABC-type branched-chain amino acid transport system, periplasmic component id=4288064 bin=GWF2_Methylomirabilis_70_14 species=Idiomarina sp. A28L genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched-chain amino acid ABC transporter substrate-binding protein
sw_6_scaffold_384_8
Natronorubrum bangense, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(6751..8154)
DNA (1404bp) protein (468aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA amidotransferase subunit A n=1 Tax=Natronorubrum bangense JCM 10635 RepID=L9W4N1_9EURY
Aspartyl/glutamyl-tRNA amidotransferase subunit A {ECO:0000313|EMBL:ELY43298.1}; TaxID=1227500 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natr
sw_6_scaffold_384_9
Natrinema versiforme, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(8175..9428)
DNA (1254bp) protein (418aa)
N-carbamoyl-L-amino acid amidohydrolase n=1 Tax=Natrinema versiforme JCM 10478 RepID=L9XY69_9EURY
N-carbamoyl-L-amino acid amidohydrolase {ECO:0000313|EMBL:ELY65513.1}; TaxID=1227496 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema versifor
hypothetical protein
sw_6_scaffold_384_10

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9787..10311
DNA (525bp) protein (175aa)
Transcriptional regulator, AsnC family n=1 Tax=halophilic archaeon DL31 RepID=G2MNN3_9ARCH
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:AEN07011.1}; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_6_scaffold_384_11
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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10634..11974
DNA (1341bp) protein (447aa)
acetylornithine transaminase (EC:2.6.1.11)
Class III aminotransferase n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M726_9EURY
Class III aminotransferase {ECO:0000313|EMBL:EMA41203.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis
Displaying 11 items

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