ggKbase home page

sw_6_scaffold_419

Search features with annotation key words

Displaying items 1-30 of 36 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_6_scaffold_419_1
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(196..825)
DNA (630bp) protein (210aa)
PAS domain S-box n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=L9ULU1_HALBP
PAS domain S-box {ECO:0000313|EMBL:ELY25641.1}; TaxID=469382 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum borinquense (strai
PAS domain-containing protein
sw_6_scaffold_419_2
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(973..2046)
DNA (1074bp) protein (358aa)
Diphthamide biosynthesis protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CP37_9EURY
Diphthamide biosynthesis protein {ECO:0000313|EMBL:ELZ24408.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsb
diphthamide biosynthesis protein
sw_6_scaffold_419_3
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2200..2598
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CMA9_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ24405.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
hypothetical protein
sw_6_scaffold_419_4
Haloarcula sinaiiensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2762..3598
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Haloarcula sinaiiensis ATCC 33800 RepID=M0K109_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EMA13834.1}; TaxID=662476 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula sinaiiensis ATCC
sw_6_scaffold_419_5
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3863..5044
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CP31_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ24403.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
hypothetical protein
sw_6_scaffold_419_6
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5162..6061
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CPT6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ24402.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
hypothetical protein
sw_6_scaffold_419_7
Haloarcula sp. CBA1115, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6112..6468)
DNA (357bp) protein (119aa)
UPF0212 protein rrnAC0441 n=9 Tax=Haloarcula RepID=Y441_HALMA
hypothetical protein
UPF0212 protein SG26_13750 {ECO:0000256|HAMAP-Rule:MF_01223}; TaxID=1592728 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula sp. CBA11
sw_6_scaffold_419_8
Natronococcus occultus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6770..6949
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8D6P6_HALXS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB37302.1}; Flags: Precursor;; TaxID=694430 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcu
sw_6_scaffold_419_9
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7111..7836
DNA (726bp) protein (242aa)
Proteasome subunit beta {ECO:0000256|HAMAP-Rule:MF_02113}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_02113};; 20S proteasome beta subunit {ECO:0000256|HAMAP-Rule:MF_02113}; Proteasome core protein PsmB {
Proteasome subunit beta n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CR95_9EURY
psmA3; proteasome subunit alpha
sw_6_scaffold_419_10
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7905..9281
DNA (1377bp) protein (459aa)
phosphomannomutase n=1 Tax=Halomicrobium katesii RepID=UPI0003615BC9
Phosphomannomutase {ECO:0000313|EMBL:EJN61494.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
sw_6_scaffold_419_11
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9343..9738
DNA (396bp) protein (132aa)
Cytidine deaminase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CRR1_9EURY
Cytidine deaminase {ECO:0000313|EMBL:ELZ24544.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-9-1.;
cytidine deaminase
sw_6_scaffold_419_12
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9735..10631
DNA (897bp) protein (299aa)
Uridine phosphorylase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CPK9_9EURY
Uridine phosphorylase {ECO:0000313|EMBL:ELZ24543.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-9-
purine or other phosphorylase family 1
sw_6_scaffold_419_13
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10710..11855
DNA (1146bp) protein (382aa)
Galactonate dehydratase n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J3L2_HALJB
galactonate dehydratase
Galactonate dehydratase {ECO:0000313|EMBL:ADJ15319.1}; TaxID=795797 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halalkalicoccus.;" source="Halalkalicoccus jeotgal
sw_6_scaffold_419_14
Arthrobacter sp. PAMC25486, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11929..13308
DNA (1380bp) protein (460aa)
Sulfatase n=1 Tax=Natrialba taiwanensis DSM 12281 RepID=L9ZZC0_9EURY
sulfatase
Sulfatase {ECO:0000313|EMBL:AIY03212.1}; TaxID=1494608 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. PAMC25486.;"
sw_6_scaffold_419_15
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13324..14034)
DNA (711bp) protein (237aa)
ndh3; NADH dehydrogenase (EC:1.6.99.3)
NADH dehydrogenase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CRQ6_9EURY
NADH dehydrogenase {ECO:0000313|EMBL:ELZ24539.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-9-1.;
sw_6_scaffold_419_16
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14527..15060)
DNA (534bp) protein (178aa)
Transcriptional regulator n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CPK4_9EURY
Transcriptional regulator {ECO:0000313|EMBL:ELZ24538.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense
hypothetical protein
sw_6_scaffold_419_17
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

15201..16121
DNA (921bp) protein (307aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D618_9EURY
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:ELZ30303.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex
nucleoside-diphosphate-sugar epimerase ( UDP-glucose 4-epimerase)
sw_6_scaffold_419_18
Natrialba asiatica, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

16148..16768
DNA (621bp) protein (207aa)
cobC; probable adenosylcobalamin 5'-phosphate phosphatase / alpha-ribazole 5'-phosphate phosphatase (EC:3.1.3.73)
Phosphoglycerate mutase n=1 Tax=Natrialba asiatica (strain ATCC 700177 / DSM 12278 / JCM 9576 / FERM P-10747 / NBRC 102637 / 172P1) RepID=M0B215_NATA1
Phosphoglycerate mutase {ECO:0000313|EMBL:ELZ04946.1}; TaxID=29540 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba asiatica (strain ATCC 7001
sw_6_scaffold_419_19
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

16879..17757
DNA (879bp) protein (293aa)
Arginase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CMR3_9EURY
Arginase {ECO:0000313|EMBL:ELZ24535.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-9-1.;"
arginase
sw_6_scaffold_419_20
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(17787..18224)
DNA (438bp) protein (146aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; H
DNA gyrase subunit alpha (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CPJ9_9EURY
sw_6_scaffold_419_21
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18498..20039
DNA (1542bp) protein (514aa)
val start codon n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5D77
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
hypothetical protein
sw_6_scaffold_419_22
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20256..22172)
DNA (1917bp) protein (639aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=797114 species="Archaea; Eur
DNA gyrase subunit B n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CQ73_9EURY
DNA gyrase, B subunit
sw_6_scaffold_419_23
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22843..24705
DNA (1863bp) protein (621aa)
Type 2 DNA topoisomerase 6 subunit B {ECO:0000256|HAMAP-Rule:MF_00322}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00322};; Type II DNA topoisomerase VI subunit B {ECO:0000256|HAMAP-Rule:MF_00322}; TaxID=
DNA topoisomerase VI subunit B (EC:5.99.1.3)
Type 2 DNA topoisomerase 6 subunit B n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CMS9_9EURY
sw_6_scaffold_419_24
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

24708..25811
DNA (1104bp) protein (368aa)
DNA topoisomerase (EC:5.99.1.3)
Type 2 DNA topoisomerase 6 subunit A {ECO:0000256|HAMAP-Rule:MF_00132}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00132};; Type II DNA topoisomerase VI subunit A {ECO:0000256|HAMAP-Rule:MF_00132}; TaxID=
Type 2 DNA topoisomerase 6 subunit A n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NZR5_HALMD
sw_6_scaffold_419_25
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(25644..26678)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CPJ5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ24528.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
hypothetical protein
sw_6_scaffold_419_26
unknown

Not on your lists

comp(26752..27039)
DNA (288bp) protein (96aa)

This feature has no annotations

sw_6_scaffold_419_27
unknown

Not on your lists

comp(27036..27194)
DNA (159bp) protein (53aa)

This feature has no annotations

sw_6_scaffold_419_28
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(27206..27619)
DNA (414bp) protein (138aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_00407, ECO:0000256|RuleBase:RU000617}; EC=6.5.1.1 {ECO:0000256|HAMAP-Rule:MF_00407, ECO:0000256|RuleBase:RU000617};; Polydeoxyribonucleotide synthase [ATP] {ECO:0
lig; DNA ligase (ATP) (EC:6.5.1.1)
DNA ligase n=1 Tax=Candidatus Halobonum tyrrellensis G22 RepID=V4HF55_9EURY
sw_6_scaffold_419_29
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(27595..28686)
DNA (1092bp) protein (364aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_00407, ECO:0000256|RuleBase:RU000617}; EC=6.5.1.1 {ECO:0000256|HAMAP-Rule:MF_00407, ECO:0000256|RuleBase:RU000617};; Polydeoxyribonucleotide synthase [ATP] {ECO:0
lig2; DNA ligase (EC:6.5.1.1)
DNA ligase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CQ69_9EURY
sw_6_scaffold_419_30
Haloferax sp. ATCC BAA-646, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(28688..29926)
DNA (1239bp) protein (413aa)
gnaD; gluconate dehydratase (EC:4.2.1.39)
Mandelate racemase/muconate lactonizing enzyme family protein n=4 Tax=Haloferax RepID=M0FLQ9_9EURY
Mandelate racemase/muconate lactonizing enzyme family protein {ECO:0000313|EMBL:ELZ60885.1}; TaxID=1227464 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" so
Displaying items 1-30 of 36 in total

View Taxonomy