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SW_6_Actinobacteria_72_12

In projects: SW_6

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Taxonomy override: Actinobacteria

Metagenomic Context

Parent: SW_6_UNK

Properties

Avg. coverage: 11.71 Longest contig: 10.60 Kbp Bin length: 724.69 Kbp GC content: 71.73 %
Contigs count: 315 Features count: 907 rRNAs count: 0 tRNAs count: 6

Genome completeness

partial RP 29 / 55 BSCG 27 / 51 MC: 1 ASCG 7 / 38
Displaying items 101-150 of 315 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_6_scaffold_17950
Species: Frankia sp. QA3 (50%)
2 1710 bp 70.76 13.74 86.14
sw_6_scaffold_5218
Class: Actinobacteria (75%)
4 2406 bp 69.04 9.89 86.16
sw_6_scaffold_9436
Class: Actinobacteria (50%)
4 2410 bp 74.11 11.12 86.64
sw_6_scaffold_22615
Phylum: Actinobacteria (66.67%)
3 1362 bp 73.05 14.10 86.78
sw_6_scaffold_17083
Species: Micromonospora sp. M42 (50%)
2 1037 bp 70.20 13.69 86.79
sw_6_scaffold_8943
Order: Streptosporangiales (50%)
4 2909 bp 71.85 11.34 86.83
sw_6_scaffold_5865
Class: Actinobacteria (50%)
6 4325 bp 72.46 12.21 86.94
sw_6_scaffold_3371
Class: Actinobacteria (50%)
4 4157 bp 71.04 11.91 87.18
sw_6_scaffold_4822
Class: Actinobacteria (75%)
4 2559 bp 69.71 9.57 87.34
sw_6_scaffold_10236
Class: Actinobacteria (66.67%)
3 1495 bp 72.91 11.04 87.49
sw_6_scaffold_5446
Class: Actinobacteria (66.67%)
3 3561 bp 69.64 11.46 87.53
sw_6_scaffold_6398
Class: Actinobacteria (50%)
4 3198 bp 73.42 11.85 87.62
sw_6_scaffold_7393
Class: Actinobacteria (60%)
5 4410 bp 69.86 10.68 87.76
sw_6_scaffold_6990
Class: Actinobacteria (66.67%)
3 1952 bp 69.67 10.96 87.91
sw_6_scaffold_6031
Phylum: Actinobacteria (50%)
4 3688 bp 72.40 13.10 88.02
sw_6_scaffold_5221
Species: Thermomonospora curvata (50%)
2 3162 bp 72.26 10.82 88.14
sw_6_scaffold_17324
Species: Rhodococcus sp. MEB064 (50%)
2 1026 bp 70.08 10.14 88.30
sw_6_scaffold_4411
Class: Actinobacteria (53.85%)
13 10578 bp 70.62 12.71 88.34
sw_6_scaffold_8210
Species: Streptomyces xiamenensis (50%)
2 1749 bp 70.44 11.95 88.51
sw_6_scaffold_6210
Phylum: Actinobacteria (75%)
4 3650 bp 74.52 12.03 88.52
sw_6_scaffold_23220
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1395 bp 71.90 11.25 88.60
sw_6_scaffold_11053
Class: Actinobacteria (75%)
4 3481 bp 72.80 12.12 89.11
sw_6_scaffold_22053
Species: Mycobacterium rhodesiae (50%)
2 1612 bp 73.57 10.92 89.14
sw_6_scaffold_8353
Class: Actinobacteria (100%)
3 1728 bp 70.78 12.79 89.24
sw_6_scaffold_23026
Species: Actinoplanes utahensis (50%)
2 1734 bp 74.74 12.11 89.27
sw_6_scaffold_14589
Species: Streptomyces pluripotens (100%)
1 1670 bp 72.34 11.95 89.28
sw_6_scaffold_8571
Species: Modestobacter sp. KNN45-2b (50%)
2 1697 bp 74.72 11.02 89.33
sw_6_scaffold_3412
Phylum: Actinobacteria (60%)
5 5178 bp 72.83 12.26 89.34
sw_6_scaffold_15025
Species: Nesterenkonia sp. AN1 (50%)
2 1141 bp 73.44 14.29 89.40
sw_6_scaffold_11153
Species: Streptosporangium roseum (50%)
2 1406 bp 72.19 10.03 89.40
sw_6_scaffold_14793
Species: Saccharothrix espanaensis (100%)
1 1156 bp 71.28 14.62 89.53
sw_6_scaffold_3780
Class: Actinobacteria (71.43%)
7 5853 bp 72.07 11.84 89.70
sw_6_scaffold_5351
Class: Actinobacteria (60%)
5 4058 bp 71.41 11.34 89.75
sw_6_scaffold_15002
Species: Mycobacterium sinense (50%)
2 1142 bp 70.49 10.51 89.84
sw_6_scaffold_5578
Class: Actinobacteria (75%)
4 2858 bp 73.69 14.14 89.85
sw_6_scaffold_8873
Phylum: Actinobacteria (66.67%)
3 2570 bp 71.09 10.08 89.88
sw_6_scaffold_7351
Phylum: Actinobacteria (75%)
4 1886 bp 69.30 11.40 90.19
sw_6_scaffold_10762
Species: Actinoplanes utahensis (50%)
2 1442 bp 71.15 11.86 90.29
sw_6_scaffold_22786
Species: Streptosporangium roseum (66.67%)
3 1541 bp 76.31 12.98 90.33
sw_6_scaffold_2795
Class: Actinobacteria (85.71%)
7 8328 bp 72.89 11.41 90.42
sw_6_scaffold_24137
Species: Streptosporangium roseum (50%)
2 1368 bp 72.81 13.01 90.57
sw_6_scaffold_19549
Species: Cellulomonas flavigena (66.67%)
3 1356 bp 71.39 11.36 90.71
sw_6_scaffold_2556
Species: Saccharomonospora glauca (50%)
4 4646 bp 70.96 12.01 90.72
sw_6_scaffold_6412
Species: Kocuria polaris (50%)
2 2830 bp 69.79 11.94 90.74
sw_6_scaffold_5123
Species: BJP_08E140C01_Coriobacteriales_62_12 (50%)
2 2439 bp 69.13 11.23 90.77
sw_6_scaffold_8026
Species: Frankia sp. QA3 (50%)
2 1777 bp 72.54 9.57 91.00
sw_6_scaffold_10478
Class: Actinobacteria (75%)
4 2856 bp 69.78 11.90 91.39
sw_6_scaffold_18610
Species: Patulibacter medicamentivorans (50%)
2 1500 bp 71.20 8.93 91.40
sw_6_scaffold_16501
Class: Actinobacteria (66.67%)
3 1749 bp 74.39 11.84 91.42
sw_6_scaffold_4377
Class: Actinobacteria (57.14%)
7 4545 bp 61.58 8.67 91.49
Displaying items 101-150 of 315 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.