ggKbase home page
Advanced Search
Search Help

SW_6_Actinobacteria_72_12

In projects: SW_6

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Taxonomy override: Actinobacteria

Metagenomic Context

Parent: SW_6_UNK

Properties

Avg. coverage: 11.71 Longest contig: 10.60 Kbp Bin length: 724.69 Kbp GC content: 71.73 %
Contigs count: 315 Features count: 907 rRNAs count: 0 tRNAs count: 6

Genome completeness

partial RP 29 / 55 BSCG 27 / 51 MC: 1 ASCG 7 / 38
Displaying items 151-200 of 315 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_6_scaffold_5446
Class: Actinobacteria (66.67%)
3 3561 bp 69.64 11.46 87.53
sw_6_scaffold_12491
Class: Actinobacteria (66.67%)
3 1299 bp 73.21 11.62 83.14
sw_6_scaffold_3621
Class: Actinobacteria (66.67%)
3 4475 bp 73.23 12.76 91.71
sw_6_scaffold_10887
Species: Actinopolyspora erythraea (50%)
2 1429 bp 72.50 12.74 96.15
sw_6_scaffold_9844
Species: Ilumatobacter coccineus (50%)
2 2197 bp 68.64 10.88 76.74
sw_6_scaffold_12502
Species: Microbispora sp. ATCC PTA-5024 (50%)
2 1298 bp 73.81 9.24 97.77
sw_6_scaffold_17577
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (100%)
2 1901 bp 72.65 11.57 100.05
sw_6_scaffold_7084
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 2930 bp 74.03 10.10 85.49
sw_6_scaffold_9394
Species: Acidithrix ferrooxidans (50%)
2 1588 bp 71.79 11.40 98.43
sw_6_scaffold_19344
Species: Frankia symbiont of Datisca glomerata (50%)
2 2140 bp 73.04 12.15 91.68
sw_6_scaffold_8714
Species: Micromonospora sp. ATCC 39149 (50%)
2 1677 bp 70.42 10.44 82.65
sw_6_scaffold_6412
Species: Kocuria polaris (50%)
2 2830 bp 69.79 11.94 90.74
sw_6_scaffold_8026
Species: Frankia sp. QA3 (50%)
2 1777 bp 72.54 9.57 91.00
sw_6_scaffold_12529
Species: Tetrasphaera elongata (50%)
2 1296 bp 68.44 11.73 99.77
sw_6_scaffold_9184
Species: RBG_13_Actinobacteria_55_18_curated (50%)
2 2947 bp 73.70 10.45 93.65
sw_6_scaffold_12304
Species: Catenulispora acidiphila (50%)
2 1314 bp 71.61 12.10 94.29
sw_6_scaffold_11153
Species: Streptosporangium roseum (50%)
2 1406 bp 72.19 10.03 89.40
sw_6_scaffold_12767
Species: Frankia sp. EAN1pec (50%)
2 1279 bp 73.42 13.21 100.16
sw_6_scaffold_9879
Species: Actinoplanes friuliensis (50%)
2 1535 bp 69.45 7.82 82.67
sw_6_scaffold_12539
Species: Candidatus Microthrix parvicella (50%)
2 1295 bp 71.12 12.90 52.36
sw_6_scaffold_16688
Species: Actinotalea ferrariae (50%)
2 1054 bp 70.97 8.35 99.91
sw_6_scaffold_8734
Species: Mycobacterium thermoresistibile (50%)
2 1674 bp 70.49 12.13 85.30
sw_6_scaffold_5740
Species: Thermomonospora curvata (50%)
2 2254 bp 69.74 11.00 98.49
sw_6_scaffold_8737
Species: Micromonospora aurantiaca (50%)
2 1970 bp 73.86 13.86 81.17
sw_6_scaffold_22815
Species: Leucobacter sp. UCD-THU (50%)
2 1328 bp 72.67 10.62 97.82
sw_6_scaffold_9210
Species: Actinomyces sp. oral taxon 877 (50%)
2 1609 bp 73.28 12.87 96.40
sw_6_scaffold_10257
Species: Cellulomonas bogoriensis (50%)
2 1493 bp 68.99 9.65 98.26
sw_6_scaffold_20614
Species: Isoptericola variabilis (50%)
2 1532 bp 70.30 10.44 97.72
sw_6_scaffold_9904
Species: Streptomonospora alba (50%)
2 1532 bp 70.23 11.16 84.79
sw_6_scaffold_13254
Species: Frankia sp. EAN1pec (50%)
2 1246 bp 73.84 12.44 97.03
sw_6_scaffold_9675
Species: Mycobacterium phlei (50%)
2 1557 bp 70.71 12.20 91.91
sw_6_scaffold_24137
Species: Streptosporangium roseum (50%)
2 1368 bp 72.81 13.01 90.57
sw_6_scaffold_17173
Species: Candidatus Microthrix parvicella (50%)
2 1841 bp 70.61 11.46 83.43
sw_6_scaffold_12798
Species: marine actinobacterium MedAcidi-G2A (100%)
2 1276 bp 76.33 12.15 100.16
sw_6_scaffold_7843
Species: Streptomyces sp. PCS3-D2 (50%)
2 2308 bp 71.32 13.13 97.49
sw_6_scaffold_9457
Species: Intrasporangium chromatireducens (50%)
2 1580 bp 72.78 12.97 78.80
sw_6_scaffold_10966
Species: Pseudonocardia dioxanivorans (50%)
2 2543 bp 70.86 10.58 83.17
sw_6_scaffold_9691
Species: Thermomonospora curvata (50%)
2 1554 bp 71.24 9.78 92.08
sw_6_scaffold_13504
Species: Rhodococcus wratislaviensis (50%)
2 1230 bp 74.55 13.58 76.34
sw_6_scaffold_18610
Species: Patulibacter medicamentivorans (50%)
2 1500 bp 71.20 8.93 91.40
sw_6_scaffold_24256
Species: RBG_16_Actinobacteria_68_12_curated (50%)
2 1194 bp 70.77 11.31 100.25
sw_6_scaffold_10746
Species: Candidatus Actinomarina minuta (50%)
2 1443 bp 69.23 11.02 98.34
sw_6_scaffold_23026
Species: Actinoplanes utahensis (50%)
2 1734 bp 74.74 12.11 89.27
sw_6_scaffold_6247
Species: Rhodococcus ruber (50%)
2 2118 bp 70.87 13.46 100.14
sw_6_scaffold_11902
Species: Streptomyces zinciresistens (50%)
2 1345 bp 70.86 13.38 92.79
sw_6_scaffold_6713
Species: Cryptobacterium curtum (50%)
2 2010 bp 75.17 12.94 99.85
sw_6_scaffold_10762
Species: Actinoplanes utahensis (50%)
2 1442 bp 71.15 11.86 90.29
sw_6_scaffold_20828
Species: RBG_13_Actinobacteria_63_9_curated (50%)
2 1542 bp 76.78 13.42 94.36
sw_6_scaffold_9950
Species: Intrasporangium oryzae (50%)
2 1527 bp 74.79 13.36 100.00
sw_6_scaffold_23113
Species: Thermomonospora curvata (50%)
2 1255 bp 72.59 12.43 60.00
Displaying items 151-200 of 315 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.