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SW_6_Actinobacteria_72_12

In projects: SW_6

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Taxonomy override: Actinobacteria

Metagenomic Context

Parent: SW_6_UNK

Properties

Avg. coverage: 11.71 Longest contig: 10.60 Kbp Bin length: 724.69 Kbp GC content: 71.73 %
Contigs count: 315 Features count: 907 rRNAs count: 0 tRNAs count: 6

Genome completeness

partial RP 29 / 55 BSCG 27 / 51 MC: 1 ASCG 7 / 38
Displaying items 201-250 of 315 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_6_scaffold_13763
Species: Saccharopolyspora rectivirgula (50%)
2 1214 bp 72.65 12.60 96.62
sw_6_scaffold_8571
Species: Modestobacter sp. KNN45-2b (50%)
2 1697 bp 74.72 11.02 89.33
sw_6_scaffold_9268
Species: BJP_08E140C01_Coriobacteriales_62_12 (50%)
2 1603 bp 75.92 12.35 94.88
sw_6_scaffold_11697
Species: Candidatus Microthrix parvicella (100%)
2 1360 bp 72.94 10.81 99.04
sw_6_scaffold_4891
Species: Acidothermus cellulolyticus (50%)
2 3102 bp 69.47 12.48 77.08
sw_6_scaffold_5584
Species: Ilumatobacter coccineus (50%)
2 3930 bp 70.61 11.37 92.75
sw_6_scaffold_5123
Species: BJP_08E140C01_Coriobacteriales_62_12 (50%)
2 2439 bp 69.13 11.23 90.77
sw_6_scaffold_7199
Species: Amycolatopsis vancoresmycina (50%)
2 1914 bp 73.25 11.60 95.92
sw_6_scaffold_22053
Species: Mycobacterium rhodesiae (50%)
2 1612 bp 73.57 10.92 89.14
sw_6_scaffold_30115
Species: RBG_16_Actinobacteria_68_21_curated (50%)
2 1155 bp 71.95 13.42 60.00
sw_6_scaffold_16083
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1086 bp 70.72 12.34 98.07
sw_6_scaffold_23220
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1395 bp 71.90 11.25 88.60
sw_6_scaffold_8129
Species: Micromonospora aurantiaca (50%)
2 1760 bp 71.31 11.31 98.86
sw_6_scaffold_13784
Species: Thermomonospora curvata (50%)
2 1213 bp 70.98 13.27 92.25
sw_6_scaffold_6517
Species: Cellulomonas carbonis (50%)
2 2052 bp 70.13 9.06 96.64
sw_6_scaffold_12632
Species: Gordonia paraffinivorans (50%)
2 1288 bp 72.44 11.72 93.87
sw_6_scaffold_9286
Species: Micromonospora sp. M42 (50%)
2 1601 bp 74.70 11.87 96.13
sw_6_scaffold_12638
Species: Frankia sp. EAN1pec (50%)
2 2010 bp 72.99 12.54 60.15
sw_6_scaffold_22138
Species: Streptomyces cattleya (50%)
2 2254 bp 70.45 12.02 52.44
sw_6_scaffold_18867
Species: Micromonospora sp. ATCC 39149 (50%)
2 1517 bp 72.58 13.18 101.06
sw_6_scaffold_13565
Species: Streptomyces sp. AA4 (50%)
2 1226 bp 75.29 11.34 99.10
sw_6_scaffold_17945
Species: marine actinobacterium MedAcidi-G3 (50%)
2 1001 bp 75.72 11.69 77.32
sw_6_scaffold_9991
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1521 bp 71.99 12.49 80.67
sw_6_scaffold_17950
Species: Frankia sp. QA3 (50%)
2 1710 bp 70.76 13.74 86.14
sw_6_scaffold_13807
Species: Streptomyces afghaniensis (50%)
2 1212 bp 75.17 14.19 73.51
sw_6_scaffold_14730
Species: Frankia sp. CcI3 (50%)
2 1159 bp 71.96 14.06 98.36
sw_6_scaffold_4007
Species: Acidothermus cellulolyticus (50%)
2 3855 bp 66.95 10.69 100.00
sw_6_scaffold_11968
Species: Amycolatopsis azurea (50%)
2 2127 bp 71.32 11.38 93.51
sw_6_scaffold_7929
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1793 bp 69.55 11.60 63.25
sw_6_scaffold_7472
Species: Rubrobacter xylanophilus (50%)
2 1867 bp 73.27 14.41 98.50
sw_6_scaffold_8855
Species: Intrasporangium oryzae (50%)
2 1654 bp 74.12 11.85 99.58
sw_6_scaffold_16121
Species: Kutzneria albida (50%)
2 1084 bp 73.52 11.99 83.30
sw_6_scaffold_17737
Species: uncultured actinobacterium HF0500_35G12 (50%)
2 1556 bp 68.89 11.18 100.06
sw_6_scaffold_10826
Species: Arthrobacter sp. FB24 (50%)
2 1435 bp 68.71 12.26 99.30
sw_6_scaffold_15435
Species: Actinotalea ferrariae (50%)
2 1118 bp 70.66 9.66 91.50
sw_6_scaffold_8631
Species: Mycobacterium cosmeticum (50%)
2 1689 bp 72.41 10.78 94.14
sw_6_scaffold_28929
Species: Streptomyces sp. Mg1 (50%)
2 1128 bp 70.30 8.87 81.91
sw_6_scaffold_8403
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1718 bp 71.83 11.41 94.82
sw_6_scaffold_10835
Species: Frankia sp. EAN1pec (50%)
2 1434 bp 73.50 12.69 93.72
sw_6_scaffold_10379
Species: Blastococcus saxobsidens (50%)
2 1482 bp 73.35 11.54 75.71
sw_6_scaffold_14070
Species: Kitasatospora setae (50%)
2 1195 bp 73.64 9.62 66.78
sw_6_scaffold_32271
Species: Knoellia sinensis (50%)
2 1036 bp 76.83 13.42 44.31
sw_6_scaffold_8652
Species: Ilumatobacter coccineus (50%)
2 1686 bp 72.60 8.72 100.18
sw_6_scaffold_5199
Species: Microbispora sp. ATCC PTA-5024 (50%)
2 2414 bp 73.24 14.25 96.19
sw_6_scaffold_19108
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (100%)
2 1782 bp 69.70 10.49 97.64
sw_6_scaffold_15463
Species: Blastococcus saxobsidens (50%)
2 1116 bp 73.12 12.28 100.27
sw_6_scaffold_7736
Species: Ilumatobacter coccineus (50%)
2 1823 bp 69.99 10.97 94.95
sw_6_scaffold_15002
Species: Mycobacterium sinense (50%)
2 1142 bp 70.49 10.51 89.84
sw_6_scaffold_17539
Species: Tetrasphaera japonica (50%)
2 1017 bp 72.47 9.73 73.16
sw_6_scaffold_12931
Species: Acidothermus cellulolyticus (50%)
2 1267 bp 74.11 13.10 100.16
Displaying items 201-250 of 315 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.