ggKbase | organisms

SW_6_Actinobacteria_72_12

In projects: SW_6

Consensus taxonomy: Actinobacteria → Actinobacteria → Bacteria

Taxonomy override: Actinobacteria

Metagenomic Context

Parent: SW_6_UNK

Properties

Avg. coverage: 11.71 Longest contig: 10.60 Kbp Bin length: 724.69 Kbp GC content: 71.73 %

Contigs count: 315 Features count: 907 rRNAs count: 0 tRNAs count: 6

Genome completeness

partial RP 29 / 55 BSCG 27 / 51 MC: 1 ASCG 7 / 38

Displaying items 201-250 of 315 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_6_scaffold_13763 Species: Saccharopolyspora rectivirgula (50%)	2	1214 bp	72.65	12.60	96.62
sw_6_scaffold_8571 Species: Modestobacter sp. KNN45-2b (50%)	2	1697 bp	74.72	11.02	89.33
sw_6_scaffold_9268 Species: BJP_08E140C01_Coriobacteriales_62_12 (50%)	2	1603 bp	75.92	12.35	94.88
sw_6_scaffold_11697 Species: Candidatus Microthrix parvicella (100%)	2	1360 bp	72.94	10.81	99.04
sw_6_scaffold_4891 Species: Acidothermus cellulolyticus (50%)	2	3102 bp	69.47	12.48	77.08
sw_6_scaffold_5584 Species: Ilumatobacter coccineus (50%)	2	3930 bp	70.61	11.37	92.75
sw_6_scaffold_5123 Species: BJP_08E140C01_Coriobacteriales_62_12 (50%)	2	2439 bp	69.13	11.23	90.77
sw_6_scaffold_7199 Species: Amycolatopsis vancoresmycina (50%)	2	1914 bp	73.25	11.60	95.92
sw_6_scaffold_22053 Species: Mycobacterium rhodesiae (50%)	2	1612 bp	73.57	10.92	89.14
sw_6_scaffold_30115 Species: RBG_16_Actinobacteria_68_21_curated (50%)	2	1155 bp	71.95	13.42	60.00
sw_6_scaffold_16083 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)	2	1086 bp	70.72	12.34	98.07
sw_6_scaffold_23220 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)	2	1395 bp	71.90	11.25	88.60
sw_6_scaffold_8129 Species: Micromonospora aurantiaca (50%)	2	1760 bp	71.31	11.31	98.86
sw_6_scaffold_13784 Species: Thermomonospora curvata (50%)	2	1213 bp	70.98	13.27	92.25
sw_6_scaffold_6517 Species: Cellulomonas carbonis (50%)	2	2052 bp	70.13	9.06	96.64
sw_6_scaffold_12632 Species: Gordonia paraffinivorans (50%)	2	1288 bp	72.44	11.72	93.87
sw_6_scaffold_9286 Species: Micromonospora sp. M42 (50%)	2	1601 bp	74.70	11.87	96.13
sw_6_scaffold_12638 Species: Frankia sp. EAN1pec (50%)	2	2010 bp	72.99	12.54	60.15
sw_6_scaffold_22138 Species: Streptomyces cattleya (50%)	2	2254 bp	70.45	12.02	52.44
sw_6_scaffold_18867 Species: Micromonospora sp. ATCC 39149 (50%)	2	1517 bp	72.58	13.18	101.06
sw_6_scaffold_13565 Species: Streptomyces sp. AA4 (50%)	2	1226 bp	75.29	11.34	99.10
sw_6_scaffold_17945 Species: marine actinobacterium MedAcidi-G3 (50%)	2	1001 bp	75.72	11.69	77.32
sw_6_scaffold_9991 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)	2	1521 bp	71.99	12.49	80.67
sw_6_scaffold_17950 Species: Frankia sp. QA3 (50%)	2	1710 bp	70.76	13.74	86.14
sw_6_scaffold_13807 Species: Streptomyces afghaniensis (50%)	2	1212 bp	75.17	14.19	73.51
sw_6_scaffold_14730 Species: Frankia sp. CcI3 (50%)	2	1159 bp	71.96	14.06	98.36
sw_6_scaffold_4007 Species: Acidothermus cellulolyticus (50%)	2	3855 bp	66.95	10.69	100.00
sw_6_scaffold_11968 Species: Amycolatopsis azurea (50%)	2	2127 bp	71.32	11.38	93.51
sw_6_scaffold_7929 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)	2	1793 bp	69.55	11.60	63.25
sw_6_scaffold_7472 Species: Rubrobacter xylanophilus (50%)	2	1867 bp	73.27	14.41	98.50
sw_6_scaffold_8855 Species: Intrasporangium oryzae (50%)	2	1654 bp	74.12	11.85	99.58
sw_6_scaffold_16121 Species: Kutzneria albida (50%)	2	1084 bp	73.52	11.99	83.30
sw_6_scaffold_17737 Species: uncultured actinobacterium HF0500_35G12 (50%)	2	1556 bp	68.89	11.18	100.06
sw_6_scaffold_10826 Species: Arthrobacter sp. FB24 (50%)	2	1435 bp	68.71	12.26	99.30
sw_6_scaffold_15435 Species: Actinotalea ferrariae (50%)	2	1118 bp	70.66	9.66	91.50
sw_6_scaffold_8631 Species: Mycobacterium cosmeticum (50%)	2	1689 bp	72.41	10.78	94.14
sw_6_scaffold_28929 Species: Streptomyces sp. Mg1 (50%)	2	1128 bp	70.30	8.87	81.91
sw_6_scaffold_8403 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)	2	1718 bp	71.83	11.41	94.82
sw_6_scaffold_10835 Species: Frankia sp. EAN1pec (50%)	2	1434 bp	73.50	12.69	93.72
sw_6_scaffold_10379 Species: Blastococcus saxobsidens (50%)	2	1482 bp	73.35	11.54	75.71
sw_6_scaffold_14070 Species: Kitasatospora setae (50%)	2	1195 bp	73.64	9.62	66.78
sw_6_scaffold_32271 Species: Knoellia sinensis (50%)	2	1036 bp	76.83	13.42	44.31
sw_6_scaffold_8652 Species: Ilumatobacter coccineus (50%)	2	1686 bp	72.60	8.72	100.18
sw_6_scaffold_5199 Species: Microbispora sp. ATCC PTA-5024 (50%)	2	2414 bp	73.24	14.25	96.19
sw_6_scaffold_19108 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (100%)	2	1782 bp	69.70	10.49	97.64
sw_6_scaffold_15463 Species: Blastococcus saxobsidens (50%)	2	1116 bp	73.12	12.28	100.27
sw_6_scaffold_7736 Species: Ilumatobacter coccineus (50%)	2	1823 bp	69.99	10.97	94.95
sw_6_scaffold_15002 Species: Mycobacterium sinense (50%)	2	1142 bp	70.49	10.51	89.84
sw_6_scaffold_17539 Species: Tetrasphaera japonica (50%)	2	1017 bp	72.47	9.73	73.16
sw_6_scaffold_12931 Species: Acidothermus cellulolyticus (50%)	2	1267 bp	74.11	13.10	100.16

Displaying items 201-250 of 315 in total

SW_6_Actinobacteria_72_12

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_6_Actinobacteria_72_12

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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