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sw_6_scaffold_1087

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_6_scaffold_1087_1
GWA2_OD1_45_30, Parcubacteria, Bacteria

Not on your lists

comp(442..1056)
DNA (615bp) protein (205aa)
General secretion pathway protein G {ECO:0000313|EMBL:KKU06008.1}; TaxID=1618834 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_45_30.;"
gspG; T2SS protein G; K02456 general secretion pathway protein G id=5803077 bin=OD1_GWC2_34_28 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
sw_6_scaffold_1087_2
unknown

Not on your lists

comp(1241..1456)
DNA (216bp) protein (72aa)

This feature has no annotations

sw_6_scaffold_1087_3
CG_CPR15_01, CG_CPR15, Bacteria

Not on your lists

comp(1478..1963)
DNA (486bp) protein (162aa)
General secretion pathway protein G n=66 Tax=Burkholderia RepID=A0K2T5_BURCH id=5087178 bin=GWF1_OP11_31_35_complete species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_OP11_31_35_complete organism_group=OP11 (Microgenomates) organism_desc=Complete genome (was OP11_1)
id=1886998 Tax=CG_CPR15_01
fimbrial protein pilin
sw_6_scaffold_1087_4
unknown

Not on your lists

comp(1982..2233)
DNA (252bp) protein (84aa)

This feature has no annotations

sw_6_scaffold_1087_5
R_RIF_OD1_10_39_19, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

2309..3670
DNA (1362bp) protein (454aa)
von Willebrand factor, type A Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_10_39_19_curated
Conserved hypothetical protein CHP02588 id=5802979 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
sw_6_scaffold_1087_6
RHI_RIF_OD1_10_43_12b, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

3673..4767
DNA (1095bp) protein (365aa)
rod shape-determining protein; K05837 rod shape determining protein RodA Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_10_43_12b_curated
Rod shape-determining protein rodA id=2482482 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
rod shape-determining protein RodA
sw_6_scaffold_1087_7
GWA2_OD1_53_7_partial, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

4775..5848
DNA (1074bp) protein (358aa)
hypothetical protein Tax=GWA2_OD1_53_7_partial
sw_6_scaffold_1087_8
RIFOXYC1_FULL_RIF_OD1_09_52_10_curated, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

5893..7155
DNA (1263bp) protein (421aa)
sugar transferase Tax=RIFOXYC1_FULL_RIF_OD1_09_52_10_curated
sugar transferase id=5803058 bin=OD1_GWC2_34_28 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
sugar transferase
sw_6_scaffold_1087_9
R_OD1_Nomurabacteria_33_24, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

7160..7975
DNA (816bp) protein (272aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahy
5,10-methylene-tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD id=4530143 bin=GWF2_Firmicute_51_9 species=Thiovulum sp. ES genus=Thiovulum taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWF2_Firmicute_51_9 organism_group=Firmicute
sw_6_scaffold_1087_10
unknown

Not on your lists

comp(7986..8393)
DNA (408bp) protein (136aa)

This feature has no annotations

sw_6_scaffold_1087_11
R_OD1_Kaiserbacteria_49_11, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

8911..9471
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI00036EA3A3
secD; preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_49_11_curated
secD-1; preprotein translocase subunit SecD
sw_6_scaffold_1087_12
R_OD1_Kaiserbacteria_49_16, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

9468..9872
DNA (405bp) protein (135aa)
secD; protein-export membrane protein; K03072 preprotein translocase subunit SecD Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_49_16_curated
Preprotein translocase subunit SecD id=4305206 bin=GWA2_OP3_52_12 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
protein-export membrane protein SecD
sw_6_scaffold_1087_13
RIFOXYB1_FULL_OD1_Magasanikbacteria_40_15_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

9876..10931
DNA (1056bp) protein (352aa)
Protein-export membrane protein SecF n=1 Tax=uncultured bacterium RepID=K2DP69_9BACT
protein-export membrane protein SecD; K12257 SecD/SecF fusion protein Tax=RIFOXYB1_FULL_OD1_Magasanikbacteria_40_15_curated
protein-export membrane protein SecF
sw_6_scaffold_1087_14
unknown

Not on your lists

11234..12040
DNA (807bp) protein (269aa)

This feature has no annotations

sw_6_scaffold_1087_15
RIFOXYA2_FULL_OD1_Falkowbacteria_47_9_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

12314..12496
DNA (183bp) protein (61aa)
hypothetical protein Tax=RIFOXYA2_FULL_OD1_Falkowbacteria_47_9_curated
sw_6_scaffold_1087_16
R_RIF_OD1_11_45_35, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

12503..13099
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI000363D25D
transcription antitermination protein nusG; K02601 transcriptional antiterminator NusG Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_45_35_curated
NusG antitermination factor
sw_6_scaffold_1087_17
unknown

Not on your lists

13385..13522
DNA (138bp) protein (46aa)

This feature has no annotations

sw_6_scaffold_1087_18
unknown

Not on your lists

13525..14289
DNA (765bp) protein (255aa)

This feature has no annotations

sw_6_scaffold_1087_19
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


14395..14814
DNA (420bp) protein (140aa)
50S ribosomal protein L11 {ECO:0000313|EMBL:KKT21326.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 id=5803276 bin=OD1_GWC2_34_28 species=Dialister micraerophilus genus=Dialister taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
50S ribosomal protein L11
sw_6_scaffold_1087_20
unknown

Not on your lists

15273..15854
DNA (582bp) protein (194aa)

This feature has no annotations

sw_6_scaffold_1087_21
GWC1_OD1_43_30, Parcubacteria, Bacteria

Not on your lists

comp(15916..16284)
DNA (369bp) protein (123aa)
dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=1 Tax=Planococcus antarcticus DSM 14505 RepID=I4X0C1_9BACL
Dihydrofolate reductase {ECO:0000313|EMBL:KKT14952.1}; TaxID=1618910 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_43_30.;"
Displaying 21 items

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