ggKbase home page

sw_6_scaffold_151_27

Organism: SW_6_Parcubacteria_46_9

partial RP 44 / 55 MC: 1 BSCG 40 / 51 MC: 2 ASCG 8 / 38 MC: 2
Location: comp(22540..22986)

Top 3 Functional Annotations

Value Algorithm Source
rluD; pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA) (EC:4.2.1.70) Tax=RIFOXYC2_FULL_OD1_Campbellbacteria_35_25_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 48.9
  • Coverage: 131.0
  • Bit_score: 136
  • Evalue 3.10e-29
ribosomal large subunit pseudouridine synthase D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] id=5803270 bin=OD1_GWC2_34_28 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome similarity UNIREF
DB: UNIREF100
  • Identity: 46.4
  • Coverage: 125.0
  • Bit_score: 128
  • Evalue 6.00e-27
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-) similarity KEGG
DB: KEGG
  • Identity: 38.7
  • Coverage: 142.0
  • Bit_score: 90
  • Evalue 5.10e-16

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RIFOXYC2_FULL_OD1_Campbellbacteria_35_25_curated → Campbellbacteria → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 447
ATGAGCTTACTTGACCAAGTGTCTGTTGTGATTGAAACTGATTTTGTGGTCGTCATAAACAAGCCGGCCGGCTTGATGGTTCATGGTGACGGCCGAACAGGCAGGCCGCATTTGGCTCAGTGGATCCAGAAAAACTACCCGGAAACAGATGGAGTTGGTGAACCAATCCAAAGGGAGGGTAAGCCGGATATACCGCGGCCCGGCATTGTTCATCGACTGGATAAAGAAACGAGCGGTGTGGTGATTGTGGTACGAAACCAAAAAGCCTACGAGCATATTAAAAAGCAGTTTAAAAACCGAACGATTAAAAAAGAGTACCAAACACTTGTGTACGGCGAAATAACCAATCCGTCATTTACCATCGATGAGCCAAGCGTATCCAAAAACGGGACGCACCCACCAGATCCGCGTGCATCTGAAATCAATCCACCATCCGGTAGTTTGTGA
PROTEIN sequence
Length: 149
MSLLDQVSVVIETDFVVVINKPAGLMVHGDGRTGRPHLAQWIQKNYPETDGVGEPIQREGKPDIPRPGIVHRLDKETSGVVIVVRNQKAYEHIKKQFKNRTIKKEYQTLVYGEITNPSFTIDEPSVSKNGTHPPDPRASEINPPSGSL*