ggKbase home page

sw_6_scaffold_206

Search features with annotation key words

Displaying 22 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_6_scaffold_206_1
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6..1694)
DNA (1689bp) protein (563aa)
ilvB_2; thiamine pyrophosphate-requiring enzyme (acetolactate synthase 2, large subunit 2; benzoylformate decarboxylase ) (EC:2.2.1.6 4.1.1.7)
Thiamine pyrophosphate-dependent enzyme (Homolog to acetolactate synthase / benzoylformate decarboxylase) n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IS45_NATPD
Thiamine pyrophosphate-dependent enzyme (Homolog to acetolactate synthase / benzoylformate decarboxylase) {ECO:0000313|EMBL:CAI49043.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Hal
sw_6_scaffold_206_2
unknown

Not on your lists

comp(1749..2714)
DNA (966bp) protein (322aa)

This feature has no annotations

sw_6_scaffold_206_3
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2793..3347
DNA (555bp) protein (185aa)
Peroxiredoxin n=1 Tax=Halogranum salarium B-1 RepID=J3A5Y4_9EURY
Peroxiredoxin {ECO:0000313|EMBL:EJN60893.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
peroxiredoxin
sw_6_scaffold_206_4
Halorubrum californiense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3390..3935
DNA (546bp) protein (182aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_014
peptide methionine sulfoxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Halorubrum californiensis DSM 19288 RepID=M0DX94_9EURY
sw_6_scaffold_206_5
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3932..4930)
DNA (999bp) protein (333aa)
alkanesulfonate monooxygenase (EC:1.14.14.-)
Alkanesulfonate monooxygenase n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N4G7_9EURY
Alkanesulfonate monooxygenase {ECO:0000313|EMBL:EMA52781.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodina
sw_6_scaffold_206_6
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4927..5712)
DNA (786bp) protein (262aa)
dehydrogenase/reductase 5 (EC:1.1.1.-)
Probable oxidoreductase (Short-chain dehydrogenase family) {ECO:0000313|EMBL:CAI49041.1}; EC=1.1.1.- {ECO:0000313|EMBL:CAI49041.1};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobac
Probable oxidoreductase (Short-chain dehydrogenase family) n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IS47_NATPD
sw_6_scaffold_206_7
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5865..6836
DNA (972bp) protein (324aa)
hydrolase ( hydroxyacylglutathione hydrolase ) 11 (EC:3.1.2.6)
Probable metallo-beta-lactamase family hydrolase n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IS48_NATPD
Beta-lactamase domain protein {ECO:0000313|EMBL:CAI49040.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharaon
sw_6_scaffold_206_8
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6833..7513
DNA (681bp) protein (227aa)
HAD superfamily hydrolase n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IS49_NATPD
hypothetical protein
HAD superfamily hydrolase {ECO:0000313|EMBL:CAI49039.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharaonis (
sw_6_scaffold_206_9
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7594..7914
DNA (321bp) protein (107aa)
FUN14 family protein id=24616428 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
FUN14 family protein {ECO:0000313|EMBL:ESP87647.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidatus Halobonum
FUN14 family protein
sw_6_scaffold_206_10
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7925..8887)
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0LAH1_HALJP
Uncharacterized protein {ECO:0000313|EMBL:EMA28960.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula japonica DSM 613
hypothetical protein
sw_6_scaffold_206_11
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8884..9771)
DNA (888bp) protein (296aa)
Peptidase S49 n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NWJ4_HALMD
peptidase S49
Peptidase S49 {ECO:0000313|EMBL:ACV46335.1}; Flags: Precursor;; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mu
sw_6_scaffold_206_12

Not on your lists

9890..10708
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=halophilic archaeon DL31 RepID=G2MLP1_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN05644.1}; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_6_scaffold_206_13
unknown

Not on your lists

comp(10795..11262)
DNA (468bp) protein (156aa)

This feature has no annotations

sw_6_scaffold_206_14

Not on your lists


comp(11309..12034)
DNA (726bp) protein (242aa)
RNA-associated protein n=1 Tax=haloarchaeon 3A1_DGR RepID=T0ST56_9EURY
rRNA metabolism protein, SBDS family {ECO:0000313|EMBL:ESS10873.1}; TaxID=1412874 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR60.;"
ribosome maturation protein SBDS
sw_6_scaffold_206_15
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12169..13254
DNA (1086bp) protein (362aa)
Aminoglycoside phosphotransferase n=1 Tax=Halogranum salarium B-1 RepID=J3A5N1_9EURY
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:EJN60758.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
aminoglycoside phosphotransferase
sw_6_scaffold_206_16
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13286..14032)
DNA (747bp) protein (249aa)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552};; 20S proteasome alpha subunit {
proteasome subunit alpha (EC:3.4.25.1)
Proteasome subunit alpha n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KSR7_HALAR
sw_6_scaffold_206_17
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14036..14515)
DNA (480bp) protein (160aa)
Ribonuclease P protein component 2 {ECO:0000255|HAMAP-Rule:MF_00755}; Short=RNase P component 2 {ECO:0000255|HAMAP-Rule:MF_00755};; EC=3.1.26.5 {ECO:0000255|HAMAP-Rule:MF_00755};; Pop5 {ECO:0000255|HA
Ribonuclease P protein component 2 n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=RNP2_NATPD
rnp2; ribonuclease P protein component 2
sw_6_scaffold_206_18
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14517..16232)
DNA (1716bp) protein (572aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS {ECO:0000255|HAMAP-Rul
Glutamate--tRNA ligase n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=SYE_NATPD
sw_6_scaffold_206_19
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16548..17585)
DNA (1038bp) protein (346aa)
idsA_3; trifunctional short-chain (E)-prenyl diphosphate synthase ( dimethylallyltransferase / geranyltranstransferase / farnesytranstransferase ) (EC:2.5.1.1 2.5.1.10 2.5.1.29)
Geranylfarnesyl diphosphate synthase; Short=GFPS;; EC=2.5.1.81;; Farnesylgeranyl diphosphate synthase; Short=FGPP synthase;; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales
Geranylfarnesyl diphosphate synthase n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=GFPS_NATPD
sw_6_scaffold_206_20
Haloferax volcanii, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17582..18934)
DNA (1353bp) protein (451aa)
Ribonuclease J {ECO:0000256|HAMAP-Rule:MF_01492}; Short=RNase J {ECO:0000256|HAMAP-Rule:MF_01492};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01492};; TaxID=309800 species="Archaea; Euryarchaeota; Halobac
Beta-lactamase domain protein n=1 Tax=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) RepID=D4GW49_HALVD
putative hydrolase
sw_6_scaffold_206_21
Haloferax denitrificans, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19245..19979)
DNA (735bp) protein (245aa)
Isopentenyl phosphate kinase {ECO:0000256|PIRNR:PIRNR016496, ECO:0000313|EMBL:EMA04804.1}; Short=IPK {ECO:0000256|PIRNR:PIRNR016496};; EC=2.7.4.26 {ECO:0000256|PIRNR:PIRNR016496};; TaxID=662478 specie
Isopentenyl phosphate kinase n=1 Tax=Haloferax denitrificans ATCC 35960 RepID=M0J9X7_9EURY
isopentenyl phosphate kinase
sw_6_scaffold_206_22
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19972..20955)
DNA (984bp) protein (328aa)
Mevalonate kinase {ECO:0000256|HAMAP-Rule:MF_00217}; Short=MK {ECO:0000256|HAMAP-Rule:MF_00217};; Short=MVK {ECO:0000256|HAMAP-Rule:MF_00217};; EC=2.7.1.36 {ECO:0000256|HAMAP-Rule:MF_00217};; TaxID=12
mvk; mevalonate kinase (EC:2.7.1.36)
Mevalonate kinase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MPQ5_9EURY
Displaying 22 items

View Taxonomy