ggKbase home page

sw_6_scaffold_0

Search features with annotation key words

Displaying items 1-30 of 287 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_6_scaffold_0_1
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5..1987)
DNA (1983bp) protein (661aa)
Uncharacterized conserved protein n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NMK3_HALBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ELZ30968.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum J
sw_6_scaffold_0_2
Halobacterium salinarum, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2070..2567
DNA (498bp) protein (166aa)
Probable ribosome biogenesis protein OE_3895F n=2 Tax=Halobacterium salinarum RepID=TSR3_HALS3
hypothetical protein
Probable ribosome biogenesis protein VNG_2075C {ECO:0000255|HAMAP-Rule:MF_01116}; TaxID=64091 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source=
sw_6_scaffold_0_3
unknown

Not on your lists

comp(2564..2998)
DNA (435bp) protein (145aa)

This feature has no annotations

sw_6_scaffold_0_4
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3161..4186)
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Halomicrobium katesii RepID=UPI00036823F3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV46881.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mukohataei
sw_6_scaffold_0_5
Natronorubrum sulfidifaciens, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

4239..4388
DNA (150bp) protein (50aa)
50S ribosomal protein L40e n=1 Tax=Natronorubrum sulfidifaciens JCM 14089 RepID=L9WGZ4_9EURY
50S ribosomal protein L40e {ECO:0000256|HAMAP-Rule:MF_00788}; TaxID=1230460 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum sulfidifa
rpl40e; 50S ribosomal protein L40e
sw_6_scaffold_0_6
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

4468..4815
DNA (348bp) protein (116aa)
SWIM zinc finger domain protein n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IUJ1_NATPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EMA55191.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
sw_6_scaffold_0_7
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4818..5459)
DNA (642bp) protein (214aa)
hisH; imidazole glycerol phosphate synthase subunit HisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000255|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000255|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000255|HAMAP-
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=HIS5_NATPD
sw_6_scaffold_0_8
Haloferax denitrificans, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5589..6578
DNA (990bp) protein (330aa)
Putative phosphate/phosphonate ABC transporter periplasmic substrate-binding protein n=2 Tax=Haloferax RepID=M0IAV9_9EURY
Putative phosphate/phosphonate ABC transporter periplasmic substrate-binding protein {ECO:0000313|EMBL:EMA06099.1}; TaxID=662478 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferac
phnD1; putative phosphate/phosphonate ABC transporter periplasmic substrate-binding protein
sw_6_scaffold_0_9
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6662..7423
DNA (762bp) protein (254aa)
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; Flags: Precursor;; TaxID=469382 species="Archaea; Euryarchaeota; Halobac
Phosphonate ABC transporter ATPase n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NL44_HALBP
phosphonate ABC transporter ATPase rbh
sw_6_scaffold_0_10
Haloferax sp. ATCC BAA-646, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7420..8373
DNA (954bp) protein (318aa)
Putative phosphate/phosphonate ABC transporter permease n=3 Tax=Haloferax RepID=M0FDU8_9EURY
Putative phosphate/phosphonate ABC transporter permease {ECO:0000313|EMBL:ELZ58196.1}; TaxID=1227464 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="
phosphonate ABC transporter permease phne
sw_6_scaffold_0_11
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8374..8961)
DNA (588bp) protein (196aa)
Uracil-DNA glycosylase n=1 Tax=Candidatus Halobonum tyrrellensis G22 RepID=V4HIE7_9EURY
Uracil-DNA glycosylase {ECO:0000313|EMBL:ESP87694.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidatus Halobon
DNA polymerase
sw_6_scaffold_0_12
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8984..9535)
DNA (552bp) protein (184aa)
UPF0215 protein HalDL1DRAFT_0808 n=1 Tax=Halobacterium sp. DL1 RepID=G4IEC5_9EURY
UPF0215 protein HALDL1_15270 {ECO:0000256|HAMAP-Rule:MF_00582}; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source="Halobacterium sp
hypothetical protein
sw_6_scaffold_0_13

Not on your lists

comp(9536..9712)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=uncultured archaeon A07HR67 RepID=V4XWD4_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:ESS04516.1}; TaxID=1412871 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR67.;"
death domain-associated protein
sw_6_scaffold_0_14
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9795..10400
DNA (606bp) protein (202aa)
Flavoprotein n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J806_HALJB
flavoprotein
Flavoprotein {ECO:0000313|EMBL:ADJ14119.1}; TaxID=795797 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halalkalicoccus.;" source="Halalkalicoccus jeotgali (strain D
sw_6_scaffold_0_15
Halorubrum aidingense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10435..11559
DNA (1125bp) protein (375aa)
tRNA (guanine(26)-N(2))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00290}; EC=2.1.1.216 {ECO:0000256|HAMAP-Rule:MF_00290};; tRNA 2,2-dimethylguanosine-26 methyltransferase {ECO:0000256|HAMAP-Rule:
N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC:2.1.1.32)
tRNA (guanine(26)-N(2))-dimethyltransferase n=1 Tax=Halorubrum aidingense JCM 13560 RepID=M0PAR6_9EURY
sw_6_scaffold_0_16
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11621..12871
DNA (1251bp) protein (417aa)
UPF0761 family protein n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IUJ3_NATPD
hypothetical protein
UPF0761 family protein {ECO:0000313|EMBL:CAI48187.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharaonis (str
sw_6_scaffold_0_17
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12868..13776
DNA (909bp) protein (303aa)
pap2a; glucose-6-phosphatase (EC:3.1.3.9)
Glucose-6-phosphatase n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KHA2_HALAR
Glucose-6-phosphatase {ECO:0000313|EMBL:EMA20737.1}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula argentinensis DSM
sw_6_scaffold_0_18

Not on your lists

comp(13804..15198)
DNA (1395bp) protein (465aa)
glutamine synthetase, type I (EC:6.3.1.2)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
Glutamine synthetase n=1 Tax=halophilic archaeon DL31 RepID=G2MNH1_9ARCH
sw_6_scaffold_0_19
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

15292..15750
DNA (459bp) protein (153aa)
Lrp/AsnC family transcription regulator n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1Y5T3_NATM8
Lrp/AsnC family transcription regulator
Lrp/AsnC family transcription regulator {ECO:0000313|EMBL:CCQ37930.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomon
sw_6_scaffold_0_20
Natronorubrum tibetense, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(15764..16141)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Natronorubrum tibetense GA33 RepID=L9VW31_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ELY41202.1}; TaxID=1114856 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum tibetense GA33.;
sw_6_scaffold_0_21

Not on your lists

comp(16179..17114)
DNA (936bp) protein (312aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:AEN06520.1}; EC=2.6.1.42 {ECO:0000313|EMBL:AEN06520.1};; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
Branched-chain amino acid aminotransferase n=1 Tax=halophilic archaeon DL31 RepID=G2MHC5_9ARCH
sw_6_scaffold_0_22
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17159..17818)
DNA (660bp) protein (220aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|RuleBase:RU003843}; Short=DHBP synthase {ECO:0000256|RuleBase:RU003843};; EC=4.1.99.12 {ECO:0000256|RuleBase:RU003843};; TaxID=485914 species
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7P209_HALMD
3,4-dihydroxy-2-butanone 4-phosphate synthase
sw_6_scaffold_0_23
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17802..18515)
DNA (714bp) protein (238aa)
Riboflavin kinase {ECO:0000256|HAMAP-Rule:MF_01285}; Short=RFK {ECO:0000256|HAMAP-Rule:MF_01285};; EC=2.7.1.161 {ECO:0000256|HAMAP-Rule:MF_01285};; CTP-dependent riboflavin kinase {ECO:0000256|HAMAP-R
Riboflavin kinase n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LW06_9EURY
riboflavin kinase
sw_6_scaffold_0_24
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18583..19536)
DNA (954bp) protein (318aa)
S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase {ECO:0000256|HAMAP-Rule:MF_01921}; EC=4.1.3.44 {ECO:0000256|HAMAP-Rule:MF_01921};; tRNA wyosine derivatives biosynthesis protein Taw1
tRNA-modifying protein n=1 Tax=Halomicrobium katesii RepID=UPI0003608563
Wyosine base formation domain protein
sw_6_scaffold_0_25
Halorubrum litoreum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


19670..21289
DNA (1620bp) protein (540aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123, ECO:0000313|EMBL:EMA60993.1};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1
arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=4 Tax=Halorubrum RepID=M0D7U0_9EURY
sw_6_scaffold_0_26
unknown

Not on your lists

comp(21290..21433)
DNA (144bp) protein (48aa)

This feature has no annotations

sw_6_scaffold_0_27
Natrinema pellirubrum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

21524..22777
DNA (1254bp) protein (418aa)
Peptide chain release factor subunit 1 n=1 Tax=Natrinema pellirubrum (strain DSM 15624 / JCM 10476 / NCIMB 786) RepID=L0JGL4_NATP1
peptide chain release factor eRF/aRF, subunit 1
Peptide chain release factor subunit 1 {ECO:0000256|HAMAP-Rule:MF_00424}; Translation termination factor aRF1 {ECO:0000256|HAMAP-Rule:MF_00424}; TaxID=797303 species="Archaea; Euryarchaeota; Halobacte
sw_6_scaffold_0_28

Not on your lists

comp(22871..23491)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=halophilic archaeon DL31 RepID=G2MMQ2_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN06600.1}; Flags: Precursor;; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_6_scaffold_0_29
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

23603..24529
DNA (927bp) protein (309aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_0181
Ribonuclease Z n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MHY7_9EURY
ribonuclease Z
sw_6_scaffold_0_30
Halonotius sp. J07HN6, Halonotius, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

24576..24908
DNA (333bp) protein (111aa)
Ketosteroid isomerase-related protein n=3 Tax=Archaea RepID=U1NWF4_9EURY
Ketosteroid isomerase-related protein {ECO:0000313|EMBL:ERH01759.1}; TaxID=1238427 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halonotius.;" source="Halonotius sp. J0
hypothetical protein
Displaying items 1-30 of 287 in total

View Taxonomy