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sw_6_scaffold_538

Search features with annotation key words

Displaying items 1-30 of 38 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_6_scaffold_538_1

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comp(2..649)
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=euryarchaeote SCGC AAA261-E04 RepID=UPI000380EB79
Protein FixC {ECO:0000313|EMBL:EQD58162.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
FAD dependent oxidoreductase
sw_6_scaffold_538_2
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(717..1511)
DNA (795bp) protein (265aa)
Isopentenyl phosphate kinase {ECO:0000256|PIRNR:PIRNR016496}; Short=IPK {ECO:0000256|PIRNR:PIRNR016496};; EC=2.7.4.26 {ECO:0000256|PIRNR:PIRNR016496};; TaxID=1227457 species="Archaea; Euryarchaeota; H
Aspartate/glutamate/uridylate kinase n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0MWU3_9EURY
putative archaeal kinase
sw_6_scaffold_538_3
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(1508..2611)
DNA (1104bp) protein (368aa)
Mevalonate kinase {ECO:0000256|HAMAP-Rule:MF_00217}; Short=MK {ECO:0000256|HAMAP-Rule:MF_00217};; Short=MVK {ECO:0000256|HAMAP-Rule:MF_00217};; EC=2.7.1.36 {ECO:0000256|HAMAP-Rule:MF_00217};; TaxID=12
mevalonate kinase (EC:2.7.1.36)
Mevalonate kinase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MPQ5_9EURY
sw_6_scaffold_538_4
unknown

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comp(2665..2868)
DNA (204bp) protein (68aa)

This feature has no annotations

sw_6_scaffold_538_5

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3249..4121
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=halophilic archaeon DL31 RepID=G2MQ54_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN07823.1}; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_6_scaffold_538_6
Halopiger xanaduensis, Halopiger, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(4196..5056)
DNA (861bp) protein (287aa)
30S ribosomal protein S2 n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8D6C5_HALXS
30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291, ECO:0000256|SAAS:SAAS00012212}; TaxID=797210 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halopiger.;" source=
sw_6_scaffold_538_7
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(5087..6319)
DNA (1233bp) protein (411aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000
eno; phosphopyruvate hydratase (EC:4.2.1.11)
Enolase n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N4U4_9EURY
sw_6_scaffold_538_8
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(6291..6509)
DNA (219bp) protein (73aa)
DNA-directed RNA polymerase subunit K {ECO:0000256|HAMAP-Rule:MF_00192}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00192};; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Ha
DNA-directed RNA polymerase subunit K n=1 Tax=Candidatus Halobonum tyrrellensis G22 RepID=V4HNG4_9EURY
DNA-directed RNA polymerase subunit K/omega
sw_6_scaffold_538_9
Halorubrum saccharovorum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(6506..6700)
DNA (195bp) protein (65aa)
DNA-directed RNA polymerase subunit N {ECO:0000256|HAMAP-Rule:MF_00250, ECO:0000313|EMBL:KDS91409.1}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00250};; TaxID=2248 species="Archaea; Euryarchaeota; Halobac
DNA-directed RNA polymerase subunit N n=1 Tax=haloarchaeon 3A1_DGR RepID=T0SRX6_9EURY
DNA-directed RNA polymerase subunit N
sw_6_scaffold_538_10
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(6823..7218)
DNA (396bp) protein (132aa)
30S ribosomal protein S9 n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MP64_9EURY
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003817}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;"
rps9p; 30S ribosomal protein S9
sw_6_scaffold_538_11
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(7212..7655)
DNA (444bp) protein (148aa)
50S ribosomal protein L13 n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0L322_9EURY
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma lacisalsi AJ5.;
ribosomal protein L13, archaeal/eukaryotic
sw_6_scaffold_538_12
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(7652..8002)
DNA (351bp) protein (117aa)
50S ribosomal protein L18e n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N4V0_9EURY
50S ribosomal protein L18e {ECO:0000256|HAMAP-Rule:MF_00329, ECO:0000256|RuleBase:RU000573}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.
50S ribosomal protein L18
sw_6_scaffold_538_trna_2
unknown

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comp(8179..8263)
DNA (85bp)
transferRNA
sw_6_scaffold_538_13
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(8411..9181)
DNA (771bp) protein (257aa)
DNA-directed RNA polymerase subunit D {ECO:0000256|HAMAP-Rule:MF_00320}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00320};; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Ha
DNA-directed RNA polymerase subunit D n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MQ17_9EURY
DNA-directed RNA polymerase, alpha subunit/40 kD subunit
sw_6_scaffold_538_14
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(9184..9570)
DNA (387bp) protein (129aa)
30S ribosomal protein S11 n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QSE7_9EURY
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus pauciha
rps11p; 30S ribosomal protein S11P
sw_6_scaffold_538_15
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(9587..10114)
DNA (528bp) protein (176aa)
30S ribosomal protein S4 n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MP59_9EURY
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306, ECO:0000256|SAAS:SAAS00016650}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;"
rps4p; 30S ribosomal protein S4P
sw_6_scaffold_538_16
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(10114..10635)
DNA (522bp) protein (174aa)
30S ribosomal protein S13 n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MSK5_9EURY
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharoly
30S ribosomal protein S13
sw_6_scaffold_538_trna_1
unknown

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comp(10713..10798)
DNA (86bp)
transferRNA
sw_6_scaffold_538_17

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11221..11427
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=uncultured archaeon A07HB70 RepID=V4Y1B7_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:ESS06396.1}; TaxID=1412872 species="Archaea; environmental samples.;" source="uncultured archaeon A07HB70.;"
sw_6_scaffold_538_18
Pseudogymnoascus pannorum, Pseudogymnoascus, Leotiomycetes, Ascomycota, Fungi

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comp(11654..12421)
DNA (768bp) protein (256aa)
Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea RepID=V4A386_LOTGI
Uncharacterized protein {ECO:0000313|EMBL:KFX91716.1}; TaxID=1437433 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Leotiomycetes incertae sedis; Pseudeurotiaceae; Pseu
Collagen domain protein
sw_6_scaffold_538_19
Natrialba hulunbeirensis, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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13425..15236
DNA (1812bp) protein (604aa)
Peptidase S9 prolyl oligopeptidase active site domain-containing protein n=1 Tax=Natrialba hulunbeirensis JCM 10989 RepID=L9ZU64_9EURY
Peptidase S9 prolyl oligopeptidase active site domain-containing protein {ECO:0000313|EMBL:ELY89107.1}; TaxID=1227493 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natria
peptidase S9 prolyl oligopeptidase active site domain-containing protein
sw_6_scaffold_538_20
Halorubrum hochstenium, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(15528..16319)
DNA (792bp) protein (264aa)
Alpha/beta hydrolase fold protein n=1 Tax=Halorubrum hochstenium ATCC 700873 RepID=M0F3H5_9EURY
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ELZ54591.1}; TaxID=1227481 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum hochsteniu
alpha/beta hydrolase fold protein
sw_6_scaffold_538_21
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(16567..17625)
DNA (1059bp) protein (353aa)
egsA; glycerol-1-phosphate dehydrogenase (EC:1.1.1.261)
Glycerol-1-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N8K3_9EURY
Glycerol-1-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00497, ECO:0000256|SAAS:SAAS00015263}; Short=G1P dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00497};; Short=G1PDH {ECO:0000256|HAMA
sw_6_scaffold_538_22
Natronococcus jeotgali, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(17737..18714)
DNA (978bp) protein (326aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Natronococcus jeotgali DSM 18795 RepID=L9XZN3_9EURY
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ELY66043.1}; TaxID=1227498 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcus jeot
nucleoside-diphosphate-sugar epimerase
sw_6_scaffold_538_23
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(18862..23424)
DNA (4563bp) protein (1521aa)
glutamate synthase (EC:1.4.7.1)
Glutamate synthase, large subunit n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N788_9EURY
Glutamate synthase, large subunit {ECO:0000313|EMBL:EMA53423.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifo
sw_6_scaffold_538_24
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(23667..25142)
DNA (1476bp) protein (492aa)
prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=795797 species="Archaea; Euryarc
Proline--tRNA ligase n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J7U6_HALJB
sw_6_scaffold_538_25
unknown

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comp(25204..25662)
DNA (459bp) protein (153aa)

This feature has no annotations

sw_6_scaffold_538_26
unknown

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25864..25992
DNA (129bp) protein (43aa)

This feature has no annotations

sw_6_scaffold_538_27
Halorubrum aidingense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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25989..26714
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Halorubrum aidingense JCM 13560 RepID=M0P7H4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA66092.1}; TaxID=1230454 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum aidingense JCM 13560
hypothetical protein
sw_6_scaffold_538_28
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(26929..28839)
DNA (1911bp) protein (637aa)
Carbon starvation protein, membrane protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D495_9EURY
Carbon starvation protein, membrane protein {ECO:0000313|EMBL:ELZ30270.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosim
carbon starvation protein CstA
Displaying items 1-30 of 38 in total

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