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sw_6_scaffold_84

Search features with annotation key words

Displaying 27 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_6_scaffold_84_1
unknown

Not on your lists

comp(2..181)
DNA (180bp) protein (60aa)

This feature has no annotations

sw_6_scaffold_84_trna_1
unknown

Not on your lists

comp(298..370)
DNA (73bp)
transferRNA
sw_6_scaffold_84_2
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(495..854)
DNA (360bp) protein (120aa)
Zinc finger CHY domain protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MQE0_9EURY
Zinc finger CHY domain protein {ECO:0000313|EMBL:EMA46959.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharol
hypothetical protein
sw_6_scaffold_84_3
Haloarcula sinaiiensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(854..1465)
DNA (612bp) protein (204aa)
tRNA (pseudouridine(54)-N(1))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00587}; EC=2.1.1.257 {ECO:0000256|HAMAP-Rule:MF_00587};; TaxID=662476 species="Archaea; Euryarchaeota; Halobacteria; Halobact
tRNA (pseudouridine(54)-N(1))-methyltransferase n=2 Tax=Haloarcula RepID=TRMY_HALMA
hypothetical protein
sw_6_scaffold_84_4
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1548..2525)
DNA (978bp) protein (326aa)
UDP-glucose 4-epimerase n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LRS8_9EURY
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EMA36181.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100
galE7; UDP-glucose 4-epimerase
sw_6_scaffold_84_5
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2551..3531)
DNA (981bp) protein (327aa)
UDP-glucose 4-epimerase n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0NDA1_9EURY
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EMA55513.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
galE5; UDP-glucose 4-epimerase
sw_6_scaffold_84_6
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3566..4729)
DNA (1164bp) protein (388aa)
UDP-sulfoquinovose synthase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MR82_9EURY
UDP-sulfoquinovose synthase {ECO:0000313|EMBL:EMA46965.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyti
sqdB; UDP-sulfoquinovose synthase
sw_6_scaffold_84_7
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4952..6769)
DNA (1818bp) protein (606aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|H
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N2W6_9EURY
glucosamine/fructose-6-phosphate aminotransferase
sw_6_scaffold_84_8
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6769..7962)
DNA (1194bp) protein (398aa)
Nucleotidyl transferase n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MS82_HALMO
Nucleotidyl transferase {ECO:0000313|EMBL:EMA48471.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 1307
nucleotidyl transferase
sw_6_scaffold_84_9
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8302..8931)
DNA (630bp) protein (210aa)
Heat shock protein DnaJ domain-containing protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MIJ7_9EURY
Heat shock protein DnaJ domain-containing protein {ECO:0000313|EMBL:EMA45512.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="H
heat shock protein DnaJ domain-containing protein
sw_6_scaffold_84_10
Natronococcus amylolyticus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9126..9650
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Natronococcus amylolyticus DSM 10524 RepID=L9XGC5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY59733.1}; TaxID=1227497 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcus amylolyticus DSM
hypothetical protein
sw_6_scaffold_84_11
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9647..10018
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MC28_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA43327.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
sw_6_scaffold_84_12
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10221..11819
DNA (1599bp) protein (533aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NWK5_HALBP
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:ADQ69425.1}; TaxID=469382 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source
sw_6_scaffold_84_13
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11930..13738)
DNA (1809bp) protein (603aa)
Uncharacterized protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N228_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA51926.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JC
hypothetical protein
sw_6_scaffold_84_14
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13764..14345)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MM31_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA45794.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
sw_6_scaffold_84_15
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14492..15307)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CQ55_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ELZ24768.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena limicola JCM 135
sw_6_scaffold_84_16
Haloterrigena salina, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(15484..17634)
DNA (2151bp) protein (717aa)
Uncharacterized protein n=1 Tax=Haloterrigena salina JCM 13891 RepID=M0C1H6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ16498.1}; TaxID=1227488 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena salina JCM 13891
hypothetical protein
sw_6_scaffold_84_17
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

17823..19070
DNA (1248bp) protein (416aa)
serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DLE6_9EURY
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051, ECO:0000313|EMBL:ELZ34974.1}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};
sw_6_scaffold_84_18
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19137..20030
DNA (894bp) protein (298aa)
Bifunctional protein FolD n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N493_9EURY
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailanden
Methenyltetrahydrofolate cyclohydrolase
sw_6_scaffold_84_19
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20027..20548
DNA (522bp) protein (174aa)
ADP-ribose pyrophosphatase, GDP-mannose mannosyl hydrolase (EC:3.6.1.13 3.6.1.-)
Mut/nudix family protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MZX7_9EURY
Mut/nudix family protein {ECO:0000313|EMBL:EMA50853.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
sw_6_scaffold_84_20
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20583..21311)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N171_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA50854.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
hypothetical protein
sw_6_scaffold_84_21
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22129..22275
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MAC0_HALMO
Uncharacterized protein {ECO:0000313|EMBL:EMA42298.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 1307
hypothetical protein
sw_6_scaffold_84_22
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22673..22945
DNA (273bp) protein (91aa)
Transcriptional regulator PadR family protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CR93_9EURY
Transcriptional regulator PadR family protein {ECO:0000313|EMBL:ELZ24912.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halos
putative transcriptional regulator
sw_6_scaffold_84_23
Halonotius sp. J07HN6, Halonotius, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(23232..23489)
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Archaea RepID=U1NRW4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ERH00306.1}; TaxID=1238427 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halonotius.;" source="Halonotius sp. J07HN6.;"
hypothetical protein
sw_6_scaffold_84_24
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

23689..24171
DNA (483bp) protein (161aa)
Thioredoxin n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CMX5_9EURY
Thioredoxin {ECO:0000313|EMBL:ELZ23757.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-9-1.;"
thioredoxin
sw_6_scaffold_84_25
Haloferax sp. BAB2207, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

24331..24816
DNA (486bp) protein (162aa)
UspA domain-containing protein n=1 Tax=Haloferax sp. BAB2207 RepID=L5N0Z5_9EURY
UspA domain-containing protein
UspA domain-containing protein {ECO:0000313|EMBL:ELK44292.1}; TaxID=1243180 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax sp. BAB2207.;"
sw_6_scaffold_84_26
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(24850..25854)
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI00034D8981
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:AHM62287.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Fl
hydrolytic protein
Displaying 27 items

View Taxonomy