ggKbase home page

sw_6_scaffold_154

Search features with annotation key words

Displaying items 1-30 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_6_scaffold_154_1
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists


comp(2..439)
DNA (438bp) protein (146aa)
30S ribosomal protein S2 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=RS2_KORVE
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
rpsB; 30S ribosomal protein S2
sw_6_scaffold_154_trna_26
unknown

Not on your lists

comp(531..615)
DNA (85bp)
transferRNA
sw_6_scaffold_154_2
Oltmannsiellopsis viridis, Oltmannsiellopsis, Chlorophyta, Viridiplantae

Not on your lists

comp(1249..1788)
DNA (540bp) protein (180aa)
Putative site-specific DNA endonuclease n=1 Tax=Oltmannsiellopsis viridis RepID=Q20ET8_OLTVI
Putative site-specific DNA endonuclease {ECO:0000313|EMBL:ABB81975.1}; TaxID=51324 species="Eukaryota; Viridiplantae; Chlorophyta; Oltmannsiellopsis.;" source="Oltmannsiellopsis viridis (Marine flagel
site-specific DNA endonuclease
sw_6_scaffold_154_3
Morus notabilis, Morus, Rosales, rosids, Streptophyta, Viridiplantae

Not on your lists

4209..4661
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PDN7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EXC01912.1}; TaxID=981085 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae
Cell wall-associated hydrolase
sw_6_scaffold_154_trna_25
unknown

Not on your lists

comp(4930..5002)
DNA (73bp)
transferRNA
sw_6_scaffold_154_trna_24
unknown

Not on your lists

comp(5017..5090)
DNA (74bp)
transferRNA
sw_6_scaffold_154_16S_1
unknown

Not on your lists

comp(5147..6599)
DNA (1453bp)
sw_6_scaffold_154_4
Lobosphaera incisa, Lobosphaera, Chlorellales, Trebouxiophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(6724..7956)
DNA (1233bp) protein (411aa)
Elongation factor Tu, chloroplastic n=1 Tax=Trebouxiophyceae sp. MX-AZ01 RepID=J7K8N8_9CHLO
Elongation factor Tu, chloroplastic {ECO:0000256|HAMAP-Rule:MF_00118}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=312850 species="Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Ch
tufB; elongation factor Tu
sw_6_scaffold_154_5
Cyanophora paradoxa, Cyanophora, Glaucocystophyceae, Eukaryota

Not on your lists


comp(8095..8679)
DNA (585bp) protein (195aa)
50S ribosomal protein L5 n=1 Tax=Microcystis aeruginosa PCC 9806 RepID=I4GQ88_MICAE
Ribosomal protein L5 {ECO:0000313|EMBL:AIU44615.1}; TaxID=2762 species="Eukaryota; Glaucocystophyceae; Cyanophoraceae; Cyanophora.;" source="Cyanophora paradoxa.;"
rplE; 50S ribosomal protein L5
sw_6_scaffold_154_6
Moorea producens, Moorea, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists


comp(8679..9047)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Moorea producens 3L RepID=F4Y3A1_9CYAN
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=489825 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.;" source="Moo
50S ribosomal protein L14
sw_6_scaffold_154_7
Pyramimonas parkeae, Pyramimonas, Pyramimonadales, Chlorophyta, Viridiplantae

Not on your lists


comp(9010..9456)
DNA (447bp) protein (149aa)
50S ribosomal protein L16, chloroplastic n=1 Tax=Pyramimonas parkeae RepID=C0JX21_9CHLO
50S ribosomal protein L16, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004415}; TaxID=36894 species="Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Pyramimonadales; P
rplP; 50S ribosomal protein L16
sw_6_scaffold_154_8
Ettlia pseudoalveolaris, Ettlia, Chlamydomonadales, Chlorophyceae, Chlorophyta, Viridiplantae

Not on your lists


comp(9519..10250)
DNA (732bp) protein (244aa)
Ribosomal protein S3 n=1 Tax=Eutreptiella gymnastica RepID=I0J3K4_9EUGL
30S ribosomal protein S3, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01309, ECO:0000256|RuleBase:RU003626}; TaxID=3102 species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; C
30S ribosomal protein S3
sw_6_scaffold_154_9
Oltmannsiellopsis viridis, Oltmannsiellopsis, Chlorophyta, Viridiplantae

Not on your lists


comp(10335..10601)
DNA (267bp) protein (89aa)
30S ribosomal protein S19, chloroplastic n=1 Tax=Oltmannsiellopsis viridis RepID=RR19_OLTVI
30S ribosomal protein S19, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00531}; TaxID=51324 species="Eukaryota; Viridiplantae; Chlorophyta; Oltmannsiellopsis.;" source="Oltmannsiellopsis viridis (Marine f
rpsS; 30S ribosomal protein S19
sw_6_scaffold_154_10
Bathycoccus prasinos, Bathycoccus, Mamiellales, Mamiellophyceae, Chlorophyta, Viridiplantae

Not on your lists


comp(10631..11377)
DNA (747bp) protein (249aa)
50S ribosomal protein L2 n=1 Tax=Bathycoccus prasinos RepID=K8FE48_9CHLO
50S ribosomal protein L2, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=41875 species="Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bath
rplB; 50S ribosomal protein L2
sw_6_scaffold_154_11
Pyramimonas parkeae, Pyramimonas, Pyramimonadales, Chlorophyta, Viridiplantae

Not on your lists


comp(11491..11760)
DNA (270bp) protein (90aa)
50S ribosomal protein L23, chloroplastic n=1 Tax=Pyramimonas parkeae RepID=C0JX26_9CHLO
50S ribosomal protein L23, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=36894 species="Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Pyramimonadales; Pyramimonas.;" source="Pyramimon
50S ribosomal protein L23
sw_6_scaffold_154_trna_23
unknown

Not on your lists

comp(12012..12084)
DNA (73bp)
transferRNA
sw_6_scaffold_154_12
Parachlorella kessleri, Parachlorella, Chlorellales, Trebouxiophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(12316..12456)
DNA (141bp) protein (47aa)
Photosystem II reaction center protein K n=1 Tax=Parachlorella kessleri RepID=C7BET9_PARKE
Photosystem II reaction center protein K {ECO:0000256|HAMAP-Rule:MF_00441}; Short=PSII-K {ECO:0000256|HAMAP-Rule:MF_00441};; TaxID=3074 species="Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae
Photosystem II 4 kDa reaction centre component
sw_6_scaffold_154_13
unknown

Not on your lists

comp(12511..12612)
DNA (102bp) protein (34aa)

This feature has no annotations

sw_6_scaffold_154_14
Monomastix sp. OKE-1, Monomastix, Monomastigales, Mamiellophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(12658..14169)
DNA (1512bp) protein (504aa)
ATP synthase subunit alpha, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01346, ECO:0000256|RuleBase:RU004286}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346, ECO:0000256|RuleBase:RU004286};; ATP synthase
ATP synthase subunit alpha, chloroplastic n=1 Tax=Monomastix sp. (strain OKE-1) RepID=C0JWK4_MONSK
ATP synthase F1 subcomplex subunit alpha
sw_6_scaffold_154_15
Mankyua chejuensis, Mankyua, Ophioglossales, Ophioglossidae, Streptophyta, Viridiplantae

Not on your lists

comp(14173..14661)
DNA (489bp) protein (163aa)
ATP synthase subunit b, chloroplastic n=1 Tax=Mankyua chejuensis RepID=H8Y5Z7_9MONI
ATP synthase subunit b, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID
ATP synthase subunit b
sw_6_scaffold_154_16
Ostreococcus tauri, Ostreococcus, Mamiellales, Mamiellophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(14675..14923)
DNA (249bp) protein (83aa)
ATP synthase subunit c, chloroplastic n=3 Tax=Mamiellales RepID=ATPH_OSTTA
ATP synthase subunit c, chloroplastic {ECO:0000256|RuleBase:RU000698}; TaxID=70448 species="Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreoco
ATP synthase F0 subcomplex C subunit
sw_6_scaffold_154_17
Chaetosphaeridium globosum, Chaetosphaeridium, Coleochaetales, Coleochaetophyceae, Streptophyta, Viridiplantae

Not on your lists

comp(14997..15704)
DNA (708bp) protein (236aa)
ATP synthase subunit a, chloroplastic n=1 Tax=Pyramimonas parkeae RepID=C0JX46_9CHLO
ATP synthase subunit a, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01393}; ATP synthase F0 sector subunit a {ECO:0000255|HAMAP-Rule:MF_01393}; F-ATPase subunit IV {ECO:0000255|HAMAP-Rule:MF_01393}; TaxI
ATP synthase F0 subcomplex subunit A
sw_6_scaffold_154_trna_22
unknown

Not on your lists

comp(15816..15887)
DNA (72bp)
transferRNA
sw_6_scaffold_154_18
Gloeotilopsis sterilis, Gloeotilopsis, Ulotrichales, Ulvophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(15954..16352)
DNA (399bp) protein (133aa)
ATP synthase epsilon chain, chloroplastic n=1 Tax=Tetraselmis suecica RepID=Q38IA8_9CHLO
ATP synthase epsilon chain, chloroplastic {ECO:0000256|HAMAP-Rule:MF_00530, ECO:0000256|RuleBase:RU003655}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon s
ATP synthase F1 subcomplex subunit epsilon
sw_6_scaffold_154_19
Chlorella sorokiniana, Chlorella, Chlorellales, Trebouxiophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(16468..17919)
DNA (1452bp) protein (484aa)
ATP synthase subunit beta, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATP
ATP synthase subunit beta n=1 Tax=Chlorella variabilis RepID=F2YGR0_CHLVA
ATP synthase F1 subcomplex beta subunit
sw_6_scaffold_154_20
unknown

Not on your lists

comp(18200..18895)
DNA (696bp) protein (232aa)

This feature has no annotations

sw_6_scaffold_154_trna_21
unknown

Not on your lists

comp(18238..18310)
DNA (73bp)
transferRNA
sw_6_scaffold_154_trna_20
unknown

Not on your lists

comp(18320..18392)
DNA (73bp)
transferRNA
sw_6_scaffold_154_trna_19
unknown

Not on your lists

comp(18634..18705)
DNA (72bp)
transferRNA
sw_6_scaffold_154_21
R_Omnitrophica_50_24, Omnitrophica, Bacteria

Not on your lists


comp(19320..19700)
DNA (381bp) protein (127aa)
30S ribosomal protein S11 n=1 Tax=Leptolyngbya sp. PCC 6406 RepID=L8LEW5_9CYAN
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPLOWO2_01_FULL_Omnitrophica_50_24_curated
30S ribosomal protein S11
Displaying items 1-30 of 90 in total

View Taxonomy