ggKbase home page

sw_7_scaffold_52

Search features with annotation key words

Displaying items 1-30 of 35 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_7_scaffold_52_1
unknown

Not on your lists

1..90
DNA (90bp) protein (30aa)

This feature has no annotations

sw_7_scaffold_52_2

Not on your lists

comp(195..1376)
DNA (1182bp) protein (394aa)
hypothetical protein n=1 Tax=SAR324 cluster bacterium SCGC AB-629-O05 RepID=UPI0003720F0C
Marine sediment metagenome DNA, contig: S01H4_L01605 {ECO:0000313|EMBL:GAG56684.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Pleiotropic regulatory protein degT
sw_7_scaffold_52_3
RBG_13_RIF_OD1_07_37_56_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(1404..2171)
DNA (768bp) protein (256aa)
Acylneuraminate cytidylyltransferase n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D707_METSW
acylneuraminate cytidylyltransferase Tax=RBG_13_RIF_OD1_07_37_56_curated
acylneuraminate cytidylyltransferase
sw_7_scaffold_52_4
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(2339..3184)
DNA (846bp) protein (282aa)
Dehydrogenase n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AJS1_IGNAJ
putative oxidoreductase Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
dehydrogenase
sw_7_scaffold_52_5
Cyanothece sp. PCC 8801, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

4346..6598
DNA (2253bp) protein (751aa)
N-acylneuraminate-9-phosphate synthase {ECO:0000313|EMBL:ACK67416.1}; EC=2.5.1.57 {ECO:0000313|EMBL:ACK67416.1};; TaxID=41431 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cy
N-acylneuraminate-9-phosphate synthase (EC:2.5.1.57)
N-acylneuraminate-9-phosphate synthase n=2 Tax=Cyanothece RepID=B7K0D2_CYAP8
sw_7_scaffold_52_6
GWA1_OD1_40_21, Parcubacteria, Bacteria

Not on your lists

6601..8145
DNA (1545bp) protein (515aa)
Uncharacterized protein n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CNK6_9BURK
Uncharacterized protein Tax=GWA1_OD1_40_21
hypothetical protein
sw_7_scaffold_52_7
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

8527..9447
DNA (921bp) protein (307aa)
Asparagine synthetase n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WM99_9CYAN
asparagine synthase
Asparagine synthase, glutamine-hydrolyzing {ECO:0000313|EMBL:AFZ20904.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp.
sw_7_scaffold_52_8
unknown

Not on your lists

10592..10765
DNA (174bp) protein (58aa)

This feature has no annotations

sw_7_scaffold_52_9
Moorea producens, Moorea, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

11293..13062
DNA (1770bp) protein (590aa)
thermitase (EC:3.4.21.66)
Subtilisin-like serine protease n=1 Tax=Moorea producens 3L RepID=F4XUF7_9CYAN
Subtilisin-like serine protease {ECO:0000313|EMBL:EGJ31782.1}; TaxID=489825 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.;" source="Moorea producens 3L.;"
sw_7_scaffold_52_10
Crinalium epipsammum, Crinalium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

13059..13286
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9W0E9_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ13686.1}; TaxID=1173022 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Crinalium.;" source="Crinalium epipsammum PCC 9333.;"
sw_7_scaffold_52_11
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

13351..15375
DNA (2025bp) protein (675aa)
Biosynthetic arginine decarboxylase {ECO:0000256|HAMAP-Rule:MF_01417}; Short=ADC {ECO:0000256|HAMAP-Rule:MF_01417};; EC=4.1.1.19 {ECO:0000256|HAMAP-Rule:MF_01417, ECO:0000256|SAAS:SAAS00212226};; TaxI
arginine decarboxylase (EC:4.1.1.19)
Biosynthetic arginine decarboxylase n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VSF6_9CYAN
sw_7_scaffold_52_12
Moorea producens, Moorea, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(15553..16020)
DNA (468bp) protein (156aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_014
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Moorea producens 3L RepID=F4XYT4_9CYAN
methionine-S-sulfoxide reductase
sw_7_scaffold_52_13
Halothece sp. PCC 7418, Halothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(16102..17310)
DNA (1209bp) protein (403aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxI
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Halothece sp. (strain PCC 7418) RepID=K9YDB8_HALP7
sw_7_scaffold_52_14
unknown

Not on your lists

comp(17438..17665)
DNA (228bp) protein (76aa)

This feature has no annotations

sw_7_scaffold_52_15
Dactylococcopsis salina, Dactylococcopsis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(17755..19305)
DNA (1551bp) protein (517aa)
Ammonium transporter n=1 Tax=Dactylococcopsis salina PCC 8305 RepID=K9YR86_DACSA
ammonium transporter
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; Flags: Precursor;; TaxID=13035 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Dactylococcopsis.;" source="Dactylococcopsi
sw_7_scaffold_52_16
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(19618..20151)
DNA (534bp) protein (178aa)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4W360_9CYAN
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};;
5-(carboxyamino)imidazole ribonucleotide mutase
sw_7_scaffold_52_17
Nostoc sp. PCC 7524, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

20312..22063
DNA (1752bp) protein (584aa)
Putative RNA-binding protein, snRNP like protein n=1 Tax=Nostoc sp. (strain ATCC 29411 / PCC 7524) RepID=K9QLX5_NOSS7
putative RNA-binding protein
Putative RNA-binding protein, snRNP like protein {ECO:0000313|EMBL:AFY46378.1}; TaxID=28072 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. (strain ATCC 29411 /
sw_7_scaffold_52_18
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(22423..24114)
DNA (1692bp) protein (564aa)
Carbohydrate-selective porin, OprB family n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VVJ8_9CYAN
Carbohydrate-selective porin, OprB family {ECO:0000313|EMBL:EDX73844.1}; TaxID=118168 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Coleofasciculus.;" source="Coleofascicul
cyanobacterial porin
sw_7_scaffold_52_trna_1
unknown

Not on your lists

24447..24519
DNA (73bp)
transferRNA
sw_7_scaffold_52_19
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

24720..25325
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YVY5_LYNSP
Membrane protein {ECO:0000313|EMBL:KIF35248.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
hypothetical protein
sw_7_scaffold_52_20
Cyanothece sp. PCC 7424, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

25295..25501
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Cyanothece sp. (strain PCC 7424) RepID=B7KKL0_CYAP7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK72343.1}; TaxID=65393 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7424) (Synec
sw_7_scaffold_52_21
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

25666..26445
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4W365_9CYAN
Putative uncharacterized protein {ECO:0000313|EMBL:EDX71415.1}; TaxID=118168 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Coleofasciculus.;" source="Coleofasciculus chthon
hypothetical protein
sw_7_scaffold_52_22
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(26442..27254)
DNA (813bp) protein (271aa)
CAAX amino terminal protease family n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WBL4_9CYAN
CAAX amino terminal protease
CAAX amino terminal protease family {ECO:0000313|EMBL:AFZ17780.1}; Flags: Precursor;; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Mic
sw_7_scaffold_52_23
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(27325..27720)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WDF3_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ17779.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
sw_7_scaffold_52_24
Pleurocapsa minor, Pleurocapsa, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

28067..29065
DNA (999bp) protein (333aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=118163 species="Bacteria; Cyanobacteria; Pleurocapsales; Pleurocapsa.;"
Succinate dehydrogenase and fumarate reductase iron-sulfur protein n=1 Tax=Pleurocapsa sp. PCC 7327 RepID=K9T9Q3_9CYAN
succinate dehydrogenase and fumarate reductase iron-sulfur protein
sw_7_scaffold_52_25
Halothece sp. PCC 7418, Halothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

29191..29379
DNA (189bp) protein (63aa)
CAB/ELIP/HLIP-related protein n=1 Tax=Halothece sp. (strain PCC 7418) RepID=K9YDP3_HALP7
CAB/ELIP/HLIP family protein
CAB/ELIP/HLIP-related protein {ECO:0000313|EMBL:AFZ44994.1}; TaxID=65093 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Halothece cluster; Halothece.;" source="Halothece sp. (
sw_7_scaffold_52_26
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(29448..30254)
DNA (807bp) protein (269aa)
Ycf66 protein N-terminal domain protein n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VPD7_9CYAN
Ycf66 protein N-terminal domain protein {ECO:0000313|EMBL:EDX76177.1}; TaxID=118168 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Coleofasciculus.;" source="Coleofasciculus
Ycf66 protein
sw_7_scaffold_52_27
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(30625..30750)
DNA (126bp) protein (42aa)
Photosystem II reaction center X protein n=1 Tax=Gloeocapsa sp. PCC 7428 RepID=K9XCM9_9CHRO
Photosystem II reaction center X protein
Photosystem II reaction center X protein {ECO:0000256|HAMAP-Rule:MF_01386}; Flags: Precursor;; TaxID=1173026 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.;" sourc
sw_7_scaffold_52_28
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

31079..31369
DNA (291bp) protein (97aa)
Putative integral membrane protein n=1 Tax=Nostoc sp. (strain ATCC 29411 / PCC 7524) RepID=K9QV07_NOSS7
Integral membrane protein {ECO:0000313|EMBL:KIJ76792.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
hypothetical protein
sw_7_scaffold_52_29
Halothece sp. PCC 7418, Halothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(31435..32784)
DNA (1350bp) protein (450aa)
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.3.4.14)
Biotin carboxylase {ECO:0000313|EMBL:AFZ45395.1}; EC=6.3.4.14 {ECO:0000313|EMBL:AFZ45395.1};; TaxID=65093 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Halothece cluster; Hal
Biotin carboxylase n=1 Tax=Halothece sp. (strain PCC 7418) RepID=K9YG79_HALP7
Displaying items 1-30 of 35 in total

View Taxonomy