ggKbase home page

sw_7_scaffold_1831

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_7_scaffold_1831_1
unknown

Not on your lists

2..235
DNA (234bp) protein (78aa)

This feature has no annotations

sw_7_scaffold_1831_2
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


513..1358
DNA (846bp) protein (282aa)
Translation initiation factor 2 subunit gamma n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0JK85_HALVA
Translation initiation factor 2 subunit gamma {ECO:0000256|HAMAP-Rule:MF_00119}; aIF2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; eIF-2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; TaxID=662477 species="Arch
translation initiation factor IF-2 subunit gamma
sw_7_scaffold_1831_3
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1321..1683
DNA (363bp) protein (121aa)
Translation initiation factor 2 subunit gamma n=1 Tax=Halobacterium sp. DL1 RepID=G4IEE9_9EURY
Suspect SCG annotation. See neighboring gene [sw_7_scaffold_1831_2].
Translation initiation factor 2 subunit gamma {ECO:0000256|HAMAP-Rule:MF_00119}; aIF2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; eIF-2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; TaxID=751944 species="Arch
tif2g; translation initiation factor IF-2 subunit gamma
sw_7_scaffold_1831_4
Halorubrum californiense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1683..2135
DNA (453bp) protein (151aa)
nucleotide binding protein PINc n=1 Tax=Halorubrum sp. T3 RepID=UPI00037DEC13
Vapc superfamily-like protein {ECO:0000313|EMBL:ELZ46723.1}; TaxID=1227465 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum californiensis
PilT N-term./Vapc superfamily-like protein
sw_7_scaffold_1831_5
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


2137..2715
DNA (579bp) protein (193aa)
DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:ELZ22092.1}; EC=2.7.7.6 {ECO:0000313|EMBL:ELZ22092.1};; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae
DNA-directed RNA polymerase subunit E' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit E n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CIA7_9EURY
sw_7_scaffold_1831_6

Not on your lists

2715..2912
DNA (198bp) protein (66aa)
Transcription elongation factor Spt4 n=1 Tax=halophilic archaeon DL31 RepID=G2MMH0_9ARCH
DNA-directed RNA polymerase subunit E
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_7_scaffold_1831_7
Halobiforma nitratireducens, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2909..3487
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Halobiforma nitratireducens JCM 10879 RepID=M0LMT1_9EURY
UPF0218 protein C446_13934 {ECO:0000256|HAMAP-Rule:MF_00590}; TaxID=1227454 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma nitratireduce
conserved hypothetical protein (DUF359)
sw_7_scaffold_1831_8
Haloarcula californiae, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3674..4411)
DNA (738bp) protein (246aa)
3-beta hydroxysteroid dehydrogenase/isomerase family protein n=1 Tax=Haloarcula californiae ATCC 33799 RepID=M0JNB7_9EURY
3-beta hydroxysteroid dehydrogenase/isomerase family protein {ECO:0000313|EMBL:EMA10491.1}; TaxID=662475 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;"
3-beta hydroxysteroid dehydrogenase/isomerase family protein
sw_7_scaffold_1831_9
Halorubrum coriense, Halorubrum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4545..4979)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0E9E3_9EURY
sw_7_scaffold_1831_10
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5053..5754)
DNA (702bp) protein (234aa)
hypothetical protein id=24628880 bin=Haloquadratum_Walsbyi_J07HWQ1 species=Haloquadratum walsbyi genus=Haloquadratum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Haloquadratum_Walsbyi_J07HWQ1
Acetyltransferase (GNAT) family {ECO:0000313|EMBL:ERG91624.1}; TaxID=1238424 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum walsby
hypothetical protein
sw_7_scaffold_1831_11
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5751..6170)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=halophilic archaeon J07HX64 RepID=U1NYX9_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ERH09410.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
hypothetical protein
sw_7_scaffold_1831_12
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6406..7050
DNA (645bp) protein (215aa)
hypothetical protein id=24628959 bin=Haloquadratum_Walsbyi_J07HWQ1 species=Haloquadratum walsbyi genus=Haloquadratum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Haloquadratum_Walsbyi_J07HWQ1
Putative integral membrane protein {ECO:0000313|EMBL:ERG97201.1}; TaxID=1238425 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum wal
UPF0104 family protein
sw_7_scaffold_1831_13
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7047..7580
DNA (534bp) protein (178aa)
Putative integral membrane protein n=1 Tax=Haloquadratum walsbyi J07HQW2 RepID=U1PXK8_9EURY
Putative integral membrane protein {ECO:0000313|EMBL:ERG97201.1}; TaxID=1238425 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum wal
hypothetical protein
sw_7_scaffold_1831_14
unknown

Not on your lists

7732..8166
DNA (435bp) protein (145aa)

This feature has no annotations

sw_7_scaffold_1831_15
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

8227..8607
DNA (381bp) protein (127aa)
30S ribosomal protein S24e n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0LX54_9EURY
30S ribosomal protein S24e {ECO:0000256|HAMAP-Rule:MF_00545, ECO:0000256|RuleBase:RU004382}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" sou
ribosomal protein S24E
sw_7_scaffold_1831_16
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


8689..9591
DNA (903bp) protein (301aa)
Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0N3V3_HALMO
Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein {ECO:0000256|HAMAP-Rule:MF_01447}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriac
O-sialoglycoprotein endopeptidase
Displaying 16 items

View Taxonomy