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SW_8_UNK

In projects: SW_8

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 17.32 Longest contig: 151.13 Kbp Bin length: 41.32 Mbp GC content: 58.51 %
Contigs count: 16401 Features count: 53796 rRNAs count: 12 tRNAs count: 452

Genome completeness

megabin RP 51 / 55 MC: 46 BSCG 48 / 51 MC: 40 ASCG 38 / 38 MC: 38
Displaying items 251-300 of 16401 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_8_scaffold_647 11 12217 bp 54.69 9.06 88.43
sw_8_scaffold_1399 12 12209 bp 54.89 9.29 84.11
sw_8_scaffold_365 14 12202 bp 44.41 14.31 95.59
sw_8_scaffold_348
Class: Halobacteria (84.62%)
13 12176 bp 49.05 10.56 76.90
sw_8_scaffold_935 11 12143 bp 54.69 9.36 70.31
sw_8_scaffold_362 10 12132 bp 53.79 8.86 65.48
sw_8_scaffold_414
Domain: Bacteria (75%)
12 12116 bp 34.23 6.17 89.71
sw_8_scaffold_2094 10 12096 bp 39.72 6.61 91.74
sw_8_scaffold_1182
Domain: Bacteria (75%)
12 12093 bp 54.49 11.76 86.88
sw_8_scaffold_657
Species: Salinibacter ruber (83.33%)
12 12078 bp 67.32 68.97 80.58
sw_8_scaffold_2721
Phylum: Bacteroidetes (66.67%)
9 12066 bp 33.18 5.54 89.98
sw_8_scaffold_1409 12 11983 bp 54.03 8.87 54.40
sw_8_scaffold_2465 12 11971 bp 56.06 8.14 83.53
sw_8_scaffold_656 6 11968 bp 53.11 9.49 77.78
sw_8_scaffold_406 20 11954 bp 54.78 9.08 67.11
sw_8_scaffold_720
Domain: Bacteria (62.5%)
8 11950 bp 55.61 13.90 80.33
sw_8_scaffold_2022
Domain: Bacteria (57.14%)
7 11935 bp 45.03 16.96 82.07
sw_8_scaffold_1238 15 11902 bp 54.28 9.34 78.37
sw_8_scaffold_847
Phylum: Bacteroidetes (57.14%)
7 11866 bp 61.12 32.13 90.66
sw_8_scaffold_522
Order: Chroococcales (53.85%)
13 11863 bp 42.90 16.24 81.76
sw_8_scaffold_1483 13 11851 bp 56.16 8.38 75.03
sw_8_scaffold_1187 15 11831 bp 56.67 9.81 78.45
sw_8_scaffold_361 7 11829 bp 55.27 9.16 76.67
sw_8_scaffold_2029 13 11822 bp 52.69 8.75 60.27
sw_8_scaffold_1009
Order: Natrialbales (50%)
12 11802 bp 66.80 20.52 92.40
sw_8_scaffold_454 13 11786 bp 56.91 8.62 90.90
sw_8_scaffold_1753 16 11729 bp 39.17 6.82 62.39
sw_8_scaffold_1709
Domain: Archaea (71.43%)
14 11707 bp 52.58 8.07 81.34
sw_8_scaffold_946 16 11705 bp 54.89 9.01 73.25
sw_8_scaffold_2074
Order: Haloferacales (58.82%)
17 11671 bp 53.04 13.67 82.54
sw_8_scaffold_423
Domain: Bacteria (71.43%)
14 11663 bp 54.45 15.45 81.26
sw_8_scaffold_1020 10 11653 bp 54.02 9.98 80.76
sw_8_scaffold_2174 12 11635 bp 53.05 9.55 58.58
sw_8_scaffold_1761 16 11627 bp 52.16 8.43 99.08
sw_8_scaffold_441
Species: Salinibacter ruber (50%)
6 11615 bp 58.40 19.37 80.40
sw_8_scaffold_373 11 11593 bp 53.48 8.80 74.04
sw_8_scaffold_790
Species: Salinibacter ruber (50%)
10 11591 bp 57.50 23.51 91.39
sw_8_scaffold_2735 16 11584 bp 52.62 9.21 56.74
sw_8_scaffold_409
Domain: Bacteria (60%)
10 11584 bp 63.05 43.51 89.55
sw_8_scaffold_1351
Class: Halobacteria (50%)
12 11580 bp 38.28 7.43 77.25
sw_8_scaffold_900 15 11559 bp 54.70 9.54 76.80
sw_8_scaffold_378
Phylum: Bacteroidetes (50%)
14 11555 bp 67.16 56.56 88.07
sw_8_scaffold_999 16 11522 bp 55.87 9.95 89.49
sw_8_scaffold_966
Class: Halobacteria (63.64%)
11 11516 bp 38.23 7.17 95.53
sw_8_scaffold_1079 16 11515 bp 50.36 10.20 80.06
sw_8_scaffold_820 14 11510 bp 53.77 9.14 77.54
sw_8_scaffold_544
Class: Halobacteria (50%)
16 11483 bp 69.56 18.58 87.99
sw_8_scaffold_529 13 11430 bp 55.35 9.41 92.76
sw_8_scaffold_3744 16 11427 bp 54.97 8.70 76.35
sw_8_scaffold_1163
Species: Salinibacter ruber (92.31%)
13 11393 bp 67.30 64.01 89.74
Displaying items 251-300 of 16401 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.