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sw_8_scaffold_2581

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_8_scaffold_2581_1
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(126..773)
DNA (648bp) protein (216aa)
Outer membrane lipoprotein carrier protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H9I2_SALRM
lolA; outer membrane lipoprotein carrier protein
Outer membrane lipoprotein carrier protein {ECO:0000313|EMBL:CBH24687.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source
sw_8_scaffold_2581_2
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(1023..1562)
DNA (540bp) protein (180aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=761659 species="Ba
2'-5' RNA ligase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H9I0_SALRM
ligT; 2'-5' RNA ligase
sw_8_scaffold_2581_3
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

1664..2128
DNA (465bp) protein (155aa)
hypothetical protein
hypothetical protein id=24659520 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:CBH24686.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_8_scaffold_2581_4
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(2161..2490)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H9H9_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24684.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_8_scaffold_2581_5
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(2474..3217)
DNA (744bp) protein (248aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013, ECO:0000313|EMBL:CBH24683.1};; IGP synthase cyclase subunit {ECO:0000
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H9H8_SALRM
hisF; Imidazole glycerol phosphate synthase cyclase subunit
sw_8_scaffold_2581_6
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(3269..4072)
DNA (804bp) protein (268aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000255|HAMAP-Rule:MF_01014}; EC=5.3.1.16 {ECO:0000255|HAMAP-Rule:MF_01014};; Phosphoribosylform
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=HIS4_SALRD
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
sw_8_scaffold_2581_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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4290..4532
DNA (243bp) protein (81aa)
Putative cold shock-like protein cspG n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S297_SALRD
cold shock-like protein cspG
Putative cold shock-like protein cspG {ECO:0000313|EMBL:ABC43651.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Sal
sw_8_scaffold_2581_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

4857..5747
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HAT7_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH25142.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_8_scaffold_2581_9
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(5896..6468)
DNA (573bp) protein (191aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278, ECO:0000313|EMBL:CBH24680.1};; IGP synthase glutamine amidotransferas
Imidazole glycerol phosphate synthase subunit HisH n=2 Tax=Salinibacter ruber RepID=HIS5_SALRD
hisH; imidazole glycerol phosphate synthase subunit HisH
sw_8_scaffold_2581_10
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(6571..7389)
DNA (819bp) protein (273aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMA
Pyrroline-5-carboxylate reductase n=2 Tax=Salinibacter ruber RepID=D5H9H4_SALRM
proC; pyrroline-5-carboxylate reductase
sw_8_scaffold_2581_11
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(7504..8112)
DNA (609bp) protein (203aa)
hisB; imidazoleglycerol-phosphate dehydratase; K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] id=24659512 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|SAAS:SAAS00218099}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, E
hisB; imidazoleglycerol-phosphate dehydratase
sw_8_scaffold_2581_12
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

8289..8615
DNA (327bp) protein (109aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24677.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
hypothetical protein id=24659511 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
sw_8_scaffold_2581_13
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

8822..9493
DNA (672bp) protein (224aa)
Methionine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00098}; EC=6.1.1.10 {ECO:0000255|HAMAP-Rule:MF_00098};; Methionyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00098}; Short=MetRS {ECO:0000255|HAMAP-R
Methionine--tRNA ligase n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=SYM_SALRD
Suspect SCG annotation. See neighboring gene [sw_8_scaffold_2581_14].
metG; methionyl-tRNA synthetase
sw_8_scaffold_2581_14
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


9456..10886
DNA (1431bp) protein (477aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:
Methionine--tRNA ligase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H9H1_SALRM
metG; methionyl-tRNA synthetase
sw_8_scaffold_2581_15
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

11022..11744
DNA (723bp) protein (241aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {E
MTA/SAH nucleosidase n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S2A4_SALRD
mtnN; MTA/SAH nucleosidase
sw_8_scaffold_2581_16
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

11860..13314
DNA (1455bp) protein (485aa)
hemA; glutamyl-tRNA reductase; K02492 glutamyl-tRNA reductase [EC:1.2.1.70] id=24659507 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Glutamyl-tRNA reductase {ECO:0000255|HAMAP-Rule:MF_00087}; Short=GluTR {ECO:0000255|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000255|HAMAP-Rule:MF_00087};; TaxID=309807 species="Bacteria; Bacteroidetes
hemA; glutamyl-tRNA reductase
sw_8_scaffold_2581_17
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

13416..14114
DNA (699bp) protein (233aa)
hemC; porphobilinogen deaminase; K01749 hydroxymethylbilane synthase [EC:2.5.1.61] id=24659506 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAM
hemC; porphobilinogen deaminase
Displaying 17 items

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