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sw_8_scaffold_436

Search features with annotation key words

Displaying items 1-30 of 54 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_8_scaffold_436_1
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10..1212)
DNA (1203bp) protein (401aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318, ECO:0000313|EMBL:EMA27940.1}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318, ECO:0000313|EMBL:EMA27940.1};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMA
enolase (EC:4.2.1.11)
Enolase n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0L7L4_9EURY
sw_8_scaffold_436_2
halophilic archaeon J07HX5, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1209..1388)
DNA (180bp) protein (60aa)
RNA polymerase Rpb6; K03055 DNA-directed RNA polymerase subunit K [EC:2.7.7.6] id=24655919 bin=uncultured_archaeon_J07HX5 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultured_archaeon_J07HX5
DNA-directed RNA polymerase subunit K {ECO:0000256|HAMAP-Rule:MF_00192}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00192};; TaxID=1325472 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;"
rpoK; DNA-directed RNA polymerase subunit K (EC:2.7.7.6)
sw_8_scaffold_436_3
Haloarcula sp. CBA1115, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(1391..1591)
DNA (201bp) protein (67aa)
DNA-directed RNA polymerase subunit N (EC:2.7.7.6) id=24645660 bin=halophilic_archaeon_J07HX64 species=Salinarchaeum sp. Harcht-Bsk1 genus=Salinarchaeum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HX64
DNA-directed RNA polymerase subunit N {ECO:0000256|HAMAP-Rule:MF_00250}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00250};; TaxID=1592728 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Ha
DNA-directed RNA polymerase subunit N
sw_8_scaffold_436_4
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(1596..1997)
DNA (402bp) protein (134aa)
30S ribosomal protein S9 n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NZ12_HALMD
rps9p; 30S ribosomal protein S9
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003817}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.
sw_8_scaffold_436_5
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(1991..2431)
DNA (441bp) protein (147aa)
50S ribosomal protein L13 n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CQT4_9EURY
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbade
rpl13p; 50S ribosomal protein L13
sw_8_scaffold_436_6
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(2428..2778)
DNA (351bp) protein (117aa)
50S ribosomal protein L18e n=9 Tax=Haloarcula RepID=RL18E_HALMA
50S ribosomal protein L18
50S ribosomal protein L18e {ECO:0000256|HAMAP-Rule:MF_00329, ECO:0000256|RuleBase:RU000573}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.
sw_8_scaffold_436_trna_2
unknown

Not on your lists

comp(2797..2881)
DNA (85bp)
transferRNA
sw_8_scaffold_436_7
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3011..3799)
DNA (789bp) protein (263aa)
DNA-directed RNA polymerase subunit D {ECO:0000256|HAMAP-Rule:MF_00320}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00320};; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Hal
DNA-directed RNA polymerase subunit D n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NZ09_HALMD
RNA polymerase insert
sw_8_scaffold_436_8
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(3802..4185)
DNA (384bp) protein (128aa)
30S ribosomal protein S11 n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CSH1_9EURY
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbade
rps11p; 30S ribosomal protein S11P
sw_8_scaffold_436_9
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(4186..4710)
DNA (525bp) protein (175aa)
rps4p; 30S ribosomal protein S4P; K02986 small subunit ribosomal protein S4 id=24648739 bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306, ECO:0000256|SAAS:SAAS00016650}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J
rps4p; 30S ribosomal protein S4P
sw_8_scaffold_436_10
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(4697..5233)
DNA (537bp) protein (179aa)
30S ribosomal protein S13 n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PFE3_9EURY
30S ribosomal protein S18e (S13p)
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus tiamatea
sw_8_scaffold_436_trna_1
unknown

Not on your lists

comp(5253..5335)
DNA (83bp)
transferRNA
sw_8_scaffold_436_11
Natronococcus occultus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5595..6857
DNA (1263bp) protein (421aa)
isocitrate dehydrogenase (NADP) (EC:1.1.1.42)
Isocitrate dehydrogenase (NADP) {ECO:0000313|EMBL:AGB36248.1}; EC=1.1.1.42 {ECO:0000313|EMBL:AGB36248.1};; TaxID=694430 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natr
Isocitrate dehydrogenase (NADP) n=1 Tax=Natronococcus occultus SP4 RepID=L0JWL6_9EURY
sw_8_scaffold_436_12
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7343..7888
DNA (546bp) protein (182aa)
histidine triad (HIT) protein id=24646892 bin=halophilic_archaeon_J07HX64 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HX64
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase {ECO:0000313|EMBL:ERH11056.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="haloph
HIT family hydrolase
sw_8_scaffold_436_13
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


8159..9007
DNA (849bp) protein (283aa)
Pre-mRNA processing ribonucleoprotein, binding domain protein n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NXB6_HALMD
Pre-mRNA processing ribonucleoprotein, binding domain-containing protein
Pre-mRNA processing ribonucleoprotein, binding domain protein {ECO:0000313|EMBL:ACV48350.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobiu
sw_8_scaffold_436_14
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


9004..9630
DNA (627bp) protein (209aa)
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00351}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00351};; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrial
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4W638_9EURY
fibrillarin
sw_8_scaffold_436_15
unknown

Not on your lists

9637..10551
DNA (915bp) protein (305aa)

This feature has no annotations

sw_8_scaffold_436_16
Haloterrigena thermotolerans, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10682..11593
DNA (912bp) protein (304aa)
HhH-GPD family protein n=1 Tax=Haloterrigena thermotolerans DSM 11522 RepID=M0BJQ5_9EURY
HhH-GPD family protein {ECO:0000313|EMBL:ELZ09879.1}; TaxID=1227489 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena thermotolerans DS
HhH-GPD family protein
sw_8_scaffold_436_17
Haloferax sp. ATCC BAA-644, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11739..12821
DNA (1083bp) protein (361aa)
Xylose dehydrogenase (NAD/NADP) n=3 Tax=Haloferax RepID=M0FPT8_9EURY
Xylose dehydrogenase (NAD/NADP) {ECO:0000313|EMBL:ELZ70888.1}; TaxID=1227462 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax sp. ATCC BAA-6
xylose dehydrogenase (NAD/NADP)
sw_8_scaffold_436_18
Methanothermobacter marburgensis, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12836..14302)
DNA (1467bp) protein (489aa)
aldehyde dehydrogenase (EC:1.2.1.-)
Aldehyde dehydrogenase {ECO:0000313|EMBL:ADL58950.1}; EC=1.2.1.- {ECO:0000313|EMBL:ADL58950.1};; TaxID=79929 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae;
Uncharacterized protein n=1 Tax=haloarchaeon 3A1_DGR RepID=T0TU69_9EURY
sw_8_scaffold_436_19

Not on your lists

14391..15278
DNA (888bp) protein (296aa)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase n=1 Tax=uncultured archaeon A07HR67 RepID=V4XVZ9_9ARCH
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:ESS04376.1}; TaxID=1412871 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR67.;"
dihydrodipicolinate synthase/N-acetylneuraminate lyase
sw_8_scaffold_436_20
unknown

Not on your lists

15528..15653
DNA (126bp) protein (42aa)

This feature has no annotations

sw_8_scaffold_436_21
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(15715..16431)
DNA (717bp) protein (239aa)
Putative uncharacterized protein n=1 Tax=Halobacterium sp. DL1 RepID=G4IIU0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:AHG02900.1}; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source="Halobacterium sp. DL1.;"
hypothetical protein
sw_8_scaffold_436_22
R_Deltaproteobacteria_42_39, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16789..18180)
DNA (1392bp) protein (464aa)
Extracellular solute-binding protein, family 1 n=1 Tax=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) RepID=B9K7M3_THENN
sugar ABC transporter periplasmic sugar-binding protein Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated
Extracellular solute-binding protein, family 1 precursor
sw_8_scaffold_436_23
Halarchaeum acidiphilum, Halarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18281..19285)
DNA (1005bp) protein (335aa)
(R)-2-hydroxyacid dehydrogenase n=1 Tax=Halarchaeum acidiphilum MH1-52-1 RepID=U2YGH3_9EURY
(R)-2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:GAD53366.1}; TaxID=1261545 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae.;" source="Halarchaeum acidiphilum MH1-52-
malate dehydrogenase
sw_8_scaffold_436_24
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19294..20457)
DNA (1164bp) protein (388aa)
hypothetical protein n=1 Tax=Salsuginibacillus kocurii RepID=UPI0003683DA1
Uncharacterized protein {ECO:0000313|EMBL:KJS18889.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
carbohydrate hydrolase
sw_8_scaffold_436_25
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20468..20782)
DNA (315bp) protein (105aa)
UxaA family hydrolase n=2 Tax=Paenibacillus mucilaginosus RepID=F8FCT2_PAEMK
UxaA family hydrolase
D-galactarate dehydratase {ECO:0000313|EMBL:AFH60514.1}; TaxID=997761 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus K02.;"
sw_8_scaffold_436_26
Halorubrum tebenquichense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20908..21450)
DNA (543bp) protein (181aa)
HNH endonuclease n=1 Tax=Halorubrum tebenquichense DSM 14210 RepID=M0E3L2_9EURY
HNH endonuclease {ECO:0000313|EMBL:ELZ41618.1}; TaxID=1227485 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum tebenquichense DSM 14210.;"
restriction endonuclease
sw_8_scaffold_436_27
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22081..23097)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CJR2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ22124.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena limicola JCM 135
hypothetical protein
sw_8_scaffold_436_28
unknown

Not on your lists

comp(23097..23267)
DNA (171bp) protein (57aa)

This feature has no annotations

Displaying items 1-30 of 54 in total

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