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sw_8_scaffold_1207

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_8_scaffold_1207_1

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1..1074
-----------------
DNA (1074bp)
protein (358aa)
heavy metal translocating P-type ATPase (EC:3.6.3.4)
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:AEN07702.1}; EC=3.6.3.4 {ECO:0000313|EMBL:AEN07702.1};; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
Heavy metal translocating P-type ATPase n=2 Tax=Archaea RepID=B9LW19_HALLT
sw_8_scaffold_1207_2
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(1135..2001)
-----------------
DNA (867bp)
protein (289aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MED6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA43698.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
sw_8_scaffold_1207_3
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(2065..2304)
-----------------
DNA (240bp)
protein (80aa)
Uncharacterized protein n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2RSX5_HALTV
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB60855.1}; TaxID=543526 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena turkmenica (strai
sw_8_scaffold_1207_4
unknown

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2520..2756
-----------------
DNA (237bp)
protein (79aa)

This feature has no annotations

sw_8_scaffold_1207_5
unknown

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2870..3547
-----------------
DNA (678bp)
protein (226aa)

This feature has no annotations

sw_8_scaffold_1207_6
Natronococcus amylolyticus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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3681..3911
-----------------
DNA (231bp)
protein (77aa)
Translation initiation factor 2 subunit gamma n=1 Tax=Natronococcus amylolyticus DSM 10524 RepID=L9XJ22_9EURY
Suspect SCG annotation. See neighboring gene [sw_8_scaffold_1207_7].
Translation initiation factor 2 subunit gamma {ECO:0000256|HAMAP-Rule:MF_00119}; aIF2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; eIF-2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; TaxID=1227497 species="Arc
translation initiation factor 2 subunit gamma (aeIF-2g)
sw_8_scaffold_1207_7
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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3893..4810
-----------------
DNA (918bp)
protein (306aa)
Translation initiation factor 2 subunit gamma n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LQR6_9EURY
Translation initiation factor 2 subunit gamma {ECO:0000256|HAMAP-Rule:MF_00119}; aIF2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; eIF-2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; TaxID=1132509 species="Arc
translation initiation factor IF-2
sw_8_scaffold_1207_8
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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4820..5410
-----------------
DNA (591bp)
protein (197aa)
Putative RNA-binding protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0NBE3_9EURY
Putative RNA-binding protein {ECO:0000313|EMBL:EMA43702.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyt
SSU processome protein utp24
sw_8_scaffold_1207_9
Haloarcula hispanica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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5413..5988
-----------------
DNA (576bp)
protein (192aa)
rpoE'; DNA-directed RNA polymerase subunit E' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:AHB64571.1}; EC=2.7.7.6 {ECO:0000313|EMBL:AHB64571.1};; TaxID=1417673 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacter
DNA-directed RNA polymerase subunit E n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0KX16_9EURY
sw_8_scaffold_1207_10
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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5992..6189
-----------------
DNA (198bp)
protein (66aa)
Transcription elongation factor Spt4 n=2 Tax=Halococcus RepID=M0N3U6_HALMO
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus
DNA-directed RNA polymerase subunit E, RpoE2
sw_8_scaffold_1207_11
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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6193..6960
-----------------
DNA (768bp)
protein (256aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MH02_9EURY
UPF0218 protein C449_12837 {ECO:0000256|HAMAP-Rule:MF_00590}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharol
hypothetical protein
sw_8_scaffold_1207_12
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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7258..7788
-----------------
DNA (531bp)
protein (177aa)
TRK potassium uptake system protein n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0JMS7_HALVA
Trk potassium uptake system protein {ECO:0000313|EMBL:EMA34283.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula japo
trkA6; TRK potassium uptake system protein
sw_8_scaffold_1207_13
Halarchaeum acidiphilum, Halarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(8293..8982)
-----------------
DNA (690bp)
protein (230aa)
DNA-binding domain of ModE / Molybdate-binding domain of ModE n=1 Tax=Halarchaeum acidiphilum MH1-52-1 RepID=U3A555_9EURY
DNA-binding domain of ModE / Molybdate-binding domain of ModE {ECO:0000313|EMBL:GAD52774.1}; TaxID=1261545 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae.;" source="H
transcriptional regulator, ModE family
sw_8_scaffold_1207_14

Not on your lists

9120..10346
-----------------
DNA (1227bp)
protein (409aa)
Extracellular solute-binding protein family 1 n=1 Tax=halophilic archaeon DL31 RepID=G2MK53_9ARCH
family 1 extracellular solute-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:AEN05475.1}; Flags: Precursor;; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_8_scaffold_1207_15

Not on your lists

10377..11411
-----------------
DNA (1035bp)
protein (345aa)
ABC-type transporter, integral membrane subunit n=1 Tax=halophilic archaeon DL31 RepID=G2MK54_9ARCH
ABC transporter
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEN05476.1}; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_8_scaffold_1207_16
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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11408..12439
-----------------
DNA (1032bp)
protein (344aa)
polyamine-transporting ATPase (EC:3.6.3.31)
Spermidine/putrescine ABC transporter ATPase component n=1 Tax=Halogranum salarium B-1 RepID=J3EUW1_9EURY
Spermidine/putrescine ABC transporter ATPase component {ECO:0000313|EMBL:EJN58247.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum s
sw_8_scaffold_1207_17
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12667..13161
-----------------
DNA (495bp)
protein (165aa)
Uncharacterized protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CFI5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ22001.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena limicola JCM 135
hypothetical protein
sw_8_scaffold_1207_18
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13236..13589)
-----------------
DNA (354bp)
protein (118aa)
Transcriptional regulator n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MXU6_HALMO
Transcriptional regulator {ECO:0000313|EMBL:EMA49255.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 13
transcriptional regulator
sw_8_scaffold_1207_19
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(13818..14285)
-----------------
DNA (468bp)
protein (156aa)
ham1; nucleoside-triphosphatase (EC:3.6.1.15)
Ditpase n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0NEP5_9EURY
Ditpase {ECO:0000313|EMBL:EMA55165.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM 8989.;"
sw_8_scaffold_1207_20
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(14428..14778)
-----------------
DNA (351bp)
protein (117aa)
Uncharacterized protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M0H4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA39176.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100
hypothetical protein
sw_8_scaffold_1207_21
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(15038..16174)
-----------------
DNA (1137bp)
protein (379aa)
PHP domain-containing protein id=24616722 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
PHP domain-containing protein {ECO:0000313|EMBL:ESP87308.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidatus
metal-dependent phosphoesterase, php family
sw_8_scaffold_1207_22
Haloarcula sinaiiensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(16553..18184)
-----------------
DNA (1632bp)
protein (544aa)
Trk active potasium channel n=1 Tax=Haloarcula sinaiiensis ATCC 33800 RepID=M0K0H1_9EURY
Trk active potasium channel {ECO:0000313|EMBL:EMA14696.1}; TaxID=662476 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula sinaiiensis A
trk; trk active potasium channel
sw_8_scaffold_1207_23
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(18328..19590)
-----------------
DNA (1263bp)
protein (421aa)
glycoprotease family metalloendopeptidase (EC:3.4.24.57)
Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0NB22_9EURY
Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein {ECO:0000256|HAMAP-Rule:MF_01447}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteria
sw_8_scaffold_1207_24
unknown

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19719..20234
-----------------
DNA (516bp)
protein (172aa)

This feature has no annotations

sw_8_scaffold_1207_25
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20279..20581)
-----------------
DNA (303bp)
protein (101aa)
30S ribosomal protein S24e n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LTV3_9EURY
30S ribosomal protein S24e {ECO:0000256|HAMAP-Rule:MF_00545, ECO:0000256|RuleBase:RU004382}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.
rps24e; 30S ribosomal protein S24e
sw_8_scaffold_1207_26
unknown

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21070..21174
-----------------
DNA (105bp)
protein (35aa)

This feature has no annotations

sw_8_scaffold_1207_27
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

21428..22585
-----------------
DNA (1158bp)
protein (386aa)
fdh; formaldehyde dehydrogenase (EC:1.2.1.46); K00148 glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] id=24616335 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
Formaldehyde dehydrogenase {ECO:0000313|EMBL:ESP87727.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidatus Hal
Alcohol dehydrogenase GroES domain protein
sw_8_scaffold_1207_28
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22657..22839)
-----------------
DNA (183bp)
protein (61aa)
Uncharacterized protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CQX2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ24807.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena limicola JCM 135
hypothetical protein
sw_8_scaffold_1207_29
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22946..23359)
-----------------
DNA (414bp)
protein (138aa)
Uncharacterized protein n=1 Tax=Haloterrigena salina JCM 13891 RepID=M0BY10_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB59574.1}; TaxID=543526 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena turkmenica (strai
sw_8_scaffold_1207_30
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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23497..23652
-----------------
DNA (156bp)
protein (52aa)
Uncharacterized protein n=1 Tax=Candidatus Halobonum tyrrellensis G22 RepID=V4HCE2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ESP87728.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidatus Halobo
hypothetical protein
Displaying items 1-30 of 39 in total

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