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sw_8_scaffold_456

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_8_scaffold_456_1
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(77..943)
-----------------
DNA (867bp)
protein (289aa)
sdhB; succinate dehydrogenase iron-sulfur protein subunit (EC:1.3.99.1)
Succinate dehydrogenase and fumarate reductase iron-sulfur protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MYY5_9EURY
Succinate dehydrogenase and fumarate reductase iron-sulfur protein {ECO:0000313|EMBL:EMA45767.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloco
sw_8_scaffold_456_2
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(984..1358)
-----------------
DNA (375bp)
protein (125aa)
sdhD; succinate dehydrogenase subunit D (membrane anchor protein) (EC:1.3.99.1)
Succinate dehydrogenase subunit D n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MYM3_9EURY
Succinate dehydrogenase subunit D {ECO:0000313|EMBL:EMA50827.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifo
sw_8_scaffold_456_3
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1360..1764)
-----------------
DNA (405bp)
protein (135aa)
Succinate dehydrogenase, cytochrome b556 subunit n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4W8T4_9EURY
succinate dehydrogenase, cytochrome b556 subunit
Succinate dehydrogenase, cytochrome b556 subunit {ECO:0000313|EMBL:AGN00909.1}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salin
sw_8_scaffold_456_4
Helobdella robusta, Helobdella, Rhynchobdellida, Hirudinea, Annelida, Metazoa

Not on your lists

2008..3132
-----------------
DNA (1125bp)
protein (375aa)
Uncharacterized protein {ECO:0000313|EMBL:ESN94636.1, ECO:0000313|EnsemblMetazoa:HelroP68929}; TaxID=6412 species="Eukaryota; Metazoa; Lophotrochozoa; Annelida; Clitellata; Hirudinida; Hirudinea; Rhyn
sw_8_scaffold_456_5
Natrinema pellirubrum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3346..3825)
-----------------
DNA (480bp)
protein (160aa)
Universal stress protein UspA-like protein n=2 Tax=Natrinema pellirubrum (strain DSM 15624 / JCM 10476 / NCIMB 786) RepID=L0JQ23_NATP1
universal stress protein UspA-like protein
Universal stress protein UspA-like protein {ECO:0000313|EMBL:AGB32481.1}; TaxID=797303 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema pellir
sw_8_scaffold_456_6
Natrinema pellirubrum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3861..5453)
-----------------
DNA (1593bp)
protein (531aa)
Phosphoesterase RecJ domain protein n=1 Tax=Natrinema pellirubrum (strain DSM 15624 / JCM 10476 / NCIMB 786) RepID=L0JT38_NATP1
single-stranded DNA-specific exonuclease
Phosphoesterase RecJ domain protein {ECO:0000313|EMBL:ELY70655.1}; Single-stranded DNA-specific exonuclease {ECO:0000313|EMBL:AGB33556.1}; TaxID=797303 species="Archaea; Euryarchaeota; Halobacteria; N
sw_8_scaffold_456_7
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(5610..6434)
-----------------
DNA (825bp)
protein (275aa)
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:EMA36199.1}; EC=4.2.1.75 {ECO:0000313|EMBL:EMA36199.1};; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae;
Uroporphyrinogen-III synthase n=2 Tax=Halococcus hamelinensis RepID=M0LUZ4_9EURY
Uroporphyrinogen III synthase HEM4
sw_8_scaffold_456_8
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(6431..7612)
-----------------
DNA (1182bp)
protein (394aa)
hydroxymethylbilane synthase (EC:2.5.1.61)
Porphobilinogen deaminase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0M9U1_9EURY
Porphobilinogen deaminase {ECO:0000313|EMBL:EMA42496.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticu
sw_8_scaffold_456_9
Natronococcus jeotgali, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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7778..8173
-----------------
DNA (396bp)
protein (132aa)
Uncharacterized protein n=1 Tax=Natronococcus jeotgali DSM 18795 RepID=L9Y1H6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY66733.1}; TaxID=1227498 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcus jeotgali DSM 187
hypothetical protein
sw_8_scaffold_456_10
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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8180..8563
-----------------
DNA (384bp)
protein (128aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Putative toxin VapC {ECO:0000256|HAMAP-Rule:MF_
hypothetical PIN domain protein id=24613662 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
hypothetical PIN domain protein
sw_8_scaffold_456_11
Halopiger xanaduensis, Halopiger, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9192..10265
-----------------
DNA (1074bp)
protein (358aa)
alanine--glyoxylate transaminase (EC:2.6.1.44)
Alanine--glyoxylate transaminase {ECO:0000313|EMBL:AEH36827.1}; EC=2.6.1.44 {ECO:0000313|EMBL:AEH36827.1};; TaxID=797210 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Hal
Alanine--glyoxylate transaminase n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8D991_HALXS
sw_8_scaffold_456_12
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10390..11706
-----------------
DNA (1317bp)
protein (439aa)
Amidase n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8JAR4_HALJB
Amidase
Amidase {ECO:0000313|EMBL:ADJ14786.1}; TaxID=795797 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halalkalicoccus.;" source="Halalkalicoccus jeotgali (strain DSM 18
sw_8_scaffold_456_13
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11792..13039)
-----------------
DNA (1248bp)
protein (416aa)
Glutamate dehydrogenase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MKK2_9EURY
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticu
Glu/Leu/Phe/Val dehydrogenase
sw_8_scaffold_456_14
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13197..14111)
-----------------
DNA (915bp)
protein (305aa)
citryl-CoA lyase (EC:4.1.3.34)
Citryl-CoA lyase n=1 Tax=Halobacterium sp. DL1 RepID=G4IGE0_9EURY
Citryl-CoA lyase {ECO:0000313|EMBL:AHG03426.1}; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source="Halobacterium sp. DL1.;"
sw_8_scaffold_456_15
Natronococcus amylolyticus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14328..14795
-----------------
DNA (468bp)
protein (156aa)
Acyl dehydratase MaoC n=1 Tax=Natronococcus amylolyticus DSM 10524 RepID=L9XEB9_9EURY
Acyl dehydratase MaoC {ECO:0000313|EMBL:ELY60075.1}; TaxID=1227497 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcus amylolyticus DSM 1
acyl dehydratase
sw_8_scaffold_456_16
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14814..14963)
-----------------
DNA (150bp)
protein (50aa)
Lactoylglutathione lyase-like lyase n=1 Tax=Candidatus Halobonum tyrrellensis G22 RepID=V4IVY2_9EURY
Lactoylglutathione lyase-like lyase {ECO:0000313|EMBL:ESP87307.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candi
Glyoxalase/bleomycin resistance protein/dioxygenase
sw_8_scaffold_456_17
unknown

Not on your lists

15129..15434
-----------------
DNA (306bp)
protein (102aa)

This feature has no annotations

sw_8_scaffold_456_18
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(15599..16018)
-----------------
DNA (420bp)
protein (140aa)
Uncharacterized protein n=1 Tax=Candidatus Halobonum tyrrellensis G22 RepID=V4HIC2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ESP87669.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidatus Halobo
hypothetical protein
sw_8_scaffold_456_19
Branchiostoma floridae, Branchiostoma, Chordata, Metazoa

Not on your lists

16291..17334
-----------------
DNA (1044bp)
protein (348aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3XXL4_BRAFL
Collagen domain protein
Putative uncharacterized protein {ECO:0000313|EMBL:EEN67474.1}; Flags: Fragment;; TaxID=7739 species="Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma.;" source="Branchio
sw_8_scaffold_456_20
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17463..18494)
-----------------
DNA (1032bp)
protein (344aa)
Tyrosine--tRNA ligase {ECO:0000256|SAAS:SAAS00011232}; EC=6.1.1.1 {ECO:0000256|SAAS:SAAS00011232};; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halo
Tyrosyl-tRNA ligase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MSG3_9EURY
tyrosyl-tRNA synthetase
sw_8_scaffold_456_21
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18680..19147
-----------------
DNA (468bp)
protein (156aa)
Uncharacterized protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0MY01_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA50193.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JC
hypothetical protein
sw_8_scaffold_456_22
unknown

Not on your lists

19280..19420
-----------------
DNA (141bp)
protein (47aa)

This feature has no annotations

sw_8_scaffold_456_23
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19417..19638
-----------------
DNA (222bp)
protein (74aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0ND21_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA55458.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
sw_8_scaffold_456_24
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20379..20624)
-----------------
DNA (246bp)
protein (82aa)
XerC/D-like integrase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MCN8_9EURY
XerC/D-like integrase {ECO:0000313|EMBL:EMA43108.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus DS
site-specific recombinase xerd
sw_8_scaffold_456_25
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20767..20985)
-----------------
DNA (219bp)
protein (73aa)
XerC/D-like integrase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MCN8_9EURY
XerC/D-like integrase {ECO:0000313|EMBL:EMA43108.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus DS
site-specific recombinase xerd
sw_8_scaffold_456_26
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20989..21129)
-----------------
DNA (141bp)
protein (47aa)
XerC/D-like integrase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MCN8_9EURY
XerC/D-like integrase {ECO:0000313|EMBL:EMA43108.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus DS
sw_8_scaffold_456_27
Haloquadratum sp. J07HQX50, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

21729..21932
-----------------
DNA (204bp)
protein (68aa)
Phage integrase family n=1 Tax=Haloquadratum sp. J07HQX50 RepID=U1NNK4_9EURY
phage integrase
Phage integrase family {ECO:0000313|EMBL:ERG98688.1}; TaxID=1238426 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum sp. J07HQX50.;"
sw_8_scaffold_456_28
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22047..22244
-----------------
DNA (198bp)
protein (66aa)
Integrase family protein n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8JB47_HALJB
integrase family protein
Integrase family protein {ECO:0000313|EMBL:ADJ16500.1}; TaxID=795797 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halalkalicoccus.;" source="Halalkalicoccus jeotga
Displaying 28 items

View Taxonomy