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SW_8_Viridiplantae_55_9

SW_8_Eukaryota_55_9
In projects: SW_8

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_8_UNK

Properties

Avg. coverage: 8.92 Longest contig: 26.06 Kbp Bin length: 2.69 Mbp GC content: 55.42 %
Contigs count: 661 Features count: 2462 rRNAs count: 0 tRNAs count: 1

Genome completeness

partial RP 28 / 55 MC: 12 BSCG 18 / 51 MC: 4 ASCG 13 / 38 MC: 2
Displaying items 351-400 of 661 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_8_scaffold_1869
Species: Volvox carteri (50%)
2 4369 bp 52.55 10.28 75.12
sw_8_scaffold_25979
Species: Micromonas sp. RCC299 (50%)
2 1505 bp 56.35 7.18 77.94
sw_8_scaffold_4175
Species: Zea mays (50%)
2 2669 bp 57.14 8.47 95.88
sw_8_scaffold_16147
Species: Theobroma cacao (50%)
2 1094 bp 61.15 7.04 59.78
sw_8_scaffold_5548
Species: Oryza glaberrima (50%)
2 2221 bp 55.70 9.59 81.31
sw_8_scaffold_9465
Species: Tetraselmis sp. GSL018 (50%)
2 1571 bp 58.43 7.83 80.01
sw_8_scaffold_10388
Species: Citrus clementina (50%)
2 1478 bp 56.09 9.00 82.21
sw_8_scaffold_2706
Species: Tetraselmis sp. GSL018 (50%)
2 4389 bp 56.39 8.27 79.22
sw_8_scaffold_7162
Species: Micromonas sp. RCC299 (50%)
2 2425 bp 57.48 6.72 75.09
sw_8_scaffold_6242
Species: Tetraselmis sp. GSL018 (50%)
2 3229 bp 57.26 8.05 83.80
sw_8_scaffold_10391
Species: Tetraselmis sp. GSL018 (50%)
2 2168 bp 56.64 7.38 65.45
sw_8_scaffold_10622
Species: Brachypodium distachyon (50%)
2 1455 bp 58.21 8.59 76.08
sw_8_scaffold_9009
Species: Micromonas sp. RCC299 (50%)
2 1628 bp 60.20 7.68 98.03
sw_8_scaffold_10623
Species: Micromonas sp. RCC299 (50%)
2 1455 bp 63.30 9.55 55.26
sw_8_scaffold_5554
Species: Chlorella variabilis (50%)
2 2220 bp 57.52 8.69 87.16
sw_8_scaffold_5094
Species: Zea mays (50%)
2 2350 bp 55.87 10.17 72.38
sw_8_scaffold_5096
Species: Coccomyxa subellipsoidea (50%)
2 3683 bp 57.86 8.82 62.97
sw_8_scaffold_7861
Species: Chlamydomonas reinhardtii (50%)
2 1780 bp 53.03 10.79 46.01
sw_8_scaffold_5327
Species: Ostreococcus tauri (50%)
2 2279 bp 56.43 7.55 84.38
sw_8_scaffold_14779
Species: Ostreococcus tauri (50%)
2 2138 bp 53.41 8.56 73.95
sw_8_scaffold_7176
Species: Solanum lycopersicum (50%)
2 1889 bp 57.60 8.26 95.61
sw_8_scaffold_5334
Species: Micromonas sp. RCC299 (50%)
2 4373 bp 56.12 9.38 54.75
sw_8_scaffold_3463
Species: Volvox carteri (50%)
2 3010 bp 54.22 8.57 37.67
sw_8_scaffold_6488
Species: Chlorella variabilis (50%)
2 2006 bp 57.18 8.57 94.52
sw_8_scaffold_1778
Species: Tetraselmis sp. GSL018 (50%)
2 5620 bp 52.76 9.06 98.27
sw_8_scaffold_7180
Species: Chlorella variabilis (50%)
2 1888 bp 61.02 7.57 89.78
sw_8_scaffold_5569
Species: Micromonas pusilla (50%)
2 2216 bp 57.13 7.76 86.64
sw_8_scaffold_15708
Species: Bathycoccus prasinos (100%)
2 1115 bp 60.99 8.25 85.29
sw_8_scaffold_6491
Species: Prunus persica (50%)
2 2005 bp 55.36 9.23 73.02
sw_8_scaffold_7874
Species: Tetraselmis sp. GSL018 (50%)
2 1778 bp 58.72 9.34 88.58
sw_8_scaffold_8565
Species: Oryza glaberrima (50%)
2 1681 bp 54.31 10.71 41.40
sw_8_scaffold_30532
Species: Monoraphidium neglectum (50%)
2 1323 bp 53.06 7.94 59.41
sw_8_scaffold_3630
Species: Ostreococcus tauri (50%)
2 5271 bp 50.94 9.54 58.85
sw_8_scaffold_6036
Species: Nicotiana benthamiana (50%)
2 2762 bp 60.21 10.54 77.44
sw_8_scaffold_10186
Species: Volvox carteri (50%)
2 1495 bp 53.98 7.56 54.78
sw_8_scaffold_2318
Species: Physcomitrella patens (50%)
2 3829 bp 58.00 7.76 84.30
sw_8_scaffold_9956
Species: Theobroma cacao (50%)
2 2027 bp 54.22 9.52 66.60
sw_8_scaffold_12721
Species: Capsella rubella (50%)
2 1288 bp 54.89 8.54 76.16
sw_8_scaffold_6962
Species: Ostreococcus 'lucimarinus' (50%)
2 2589 bp 54.23 9.69 57.01
sw_8_scaffold_9039
Species: Medicago truncatula (50%)
2 3797 bp 55.41 9.45 38.56
sw_8_scaffold_6505
Species: Solanum tuberosum (50%)
2 2002 bp 55.54 9.54 71.93
sw_8_scaffold_7198
Species: Selaginella moellendorffii (50%)
2 1884 bp 54.30 8.86 71.66
sw_8_scaffold_9271
Species: Bathycoccus prasinos (50%)
2 1595 bp 55.11 6.90 103.26
sw_8_scaffold_27224
Species: Ostreococcus tauri (50%)
2 1574 bp 54.32 9.72 56.80
sw_8_scaffold_4004
Species: Erythranthe guttata (50%)
2 2744 bp 53.39 9.00 45.92
sw_8_scaffold_3190
Species: Micromonas sp. RCC299 (50%)
2 3163 bp 59.34 8.85 88.11
sw_8_scaffold_21440
Species: Helicosporidium sp. ATCC 50920 (50%)
2 1371 bp 62.80 7.37 92.78
sw_8_scaffold_3064
Species: Chlorella variabilis (50%)
2 3245 bp 57.66 8.72 92.45
sw_8_scaffold_8819
Species: Ostreococcus tauri (50%)
2 1650 bp 57.39 9.15 78.73
sw_8_scaffold_7669
Species: Volvox carteri (50%)
2 2225 bp 53.12 8.13 85.89
Displaying items 351-400 of 661 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.