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SW_8_Viridiplantae_55_9

SW_8_Eukaryota_55_9
In projects: SW_8

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_8_UNK

Properties

Avg. coverage: 8.92 Longest contig: 26.06 Kbp Bin length: 2.69 Mbp GC content: 55.42 %
Contigs count: 661 Features count: 2462 rRNAs count: 0 tRNAs count: 1

Genome completeness

partial RP 28 / 55 MC: 12 BSCG 18 / 51 MC: 4 ASCG 13 / 38 MC: 2
Displaying items 401-450 of 661 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_8_scaffold_9284
Species: Theobroma cacao (50%)
2 1593 bp 57.50 8.22 102.26
sw_8_scaffold_9286
Species: Volvox carteri (50%)
2 1593 bp 56.43 8.60 90.77
sw_8_scaffold_6984
Species: Micromonas pusilla (50%)
2 1920 bp 51.15 8.96 22.81
sw_8_scaffold_6063
Species: Micromonas sp. RCC299 (50%)
2 3779 bp 54.54 9.94 71.84
sw_8_scaffold_9750
Species: Aegilops tauschii (50%)
2 1538 bp 61.57 8.19 87.00
sw_8_scaffold_15975
Species: Ostreococcus 'lucimarinus' (50%)
2 1103 bp 62.47 7.25 90.03
sw_8_scaffold_18280
Species: Micromonas sp. RCC299 (50%)
2 1790 bp 55.25 7.26 93.02
sw_8_scaffold_13211
Species: Musa acuminata (50%)
2 1256 bp 56.69 8.68 97.45
sw_8_scaffold_1667
Species: Brachypodium distachyon (50%)
2 4727 bp 53.54 9.88 96.15
sw_8_scaffold_3493
Species: Auxenochlorella protothecoides (50%)
2 2995 bp 56.33 9.18 69.62
sw_8_scaffold_3837
Species: Monoraphidium neglectum (50%)
2 2815 bp 53.75 9.06 68.42
sw_8_scaffold_5380
Species: Physcomitrella patens (50%)
2 2264 bp 57.55 8.48 65.06
sw_8_scaffold_13215
Species: Eucalyptus grandis (50%)
2 2380 bp 57.52 11.85 82.06
sw_8_scaffold_3203
Species: Ricinus communis (50%)
2 3156 bp 58.33 8.75 75.48
sw_8_scaffold_12296
Species: Araucaria cunninghamii (50%)
2 1319 bp 51.55 11.22 53.68
sw_8_scaffold_2736
Species: Micromonas sp. RCC299 (50%)
2 3474 bp 57.46 8.98 73.40
sw_8_scaffold_19768
Species: Araucaria cunninghamii (50%)
2 1699 bp 56.86 8.12 52.62
sw_8_scaffold_22398
Species: Micromonas pusilla (50%)
2 1591 bp 58.83 8.67 103.14
sw_8_scaffold_12069
Species: Tetraselmis sp. GSL018 (50%)
2 1336 bp 61.68 10.03 69.39
sw_8_scaffold_2157
Species: Sorghum bicolor (50%)
2 5115 bp 53.06 8.95 93.43
sw_8_scaffold_6309
Species: Gossypium raimondii (50%)
2 2040 bp 58.92 7.65 98.09
sw_8_scaffold_2740
Species: Prunus persica (50%)
2 4535 bp 56.58 9.50 70.32
sw_8_scaffold_6080
Species: Araucaria cunninghamii (50%)
2 2089 bp 54.14 8.76 54.43
sw_8_scaffold_9078
Species: Ricinus communis (50%)
2 1620 bp 54.57 8.89 75.37
sw_8_scaffold_12766
Species: Dunaliella salina (50%)
2 1947 bp 53.62 9.86 81.51
sw_8_scaffold_5392
Species: Micromonas pusilla (50%)
2 2261 bp 49.62 8.76 86.11
sw_8_scaffold_9770
Species: Micromonas pusilla (50%)
2 1536 bp 54.17 9.96 96.88
sw_8_scaffold_12306
Species: Micromonas sp. RCC299 (50%)
2 2559 bp 55.76 8.83 55.33
sw_8_scaffold_13000
Species: Coccomyxa subellipsoidea (50%)
2 1268 bp 53.08 8.36 94.64
sw_8_scaffold_14153
Species: Monoraphidium neglectum (50%)
2 1198 bp 53.67 9.60 82.14
sw_8_scaffold_3506
Species: Cucumis sativus (50%)
2 2986 bp 56.63 8.81 98.66
sw_8_scaffold_13696
Species: Physcomitrella patens (50%)
2 2222 bp 57.65 8.19 90.46
sw_8_scaffold_11392
Species: Ostreococcus 'lucimarinus' (50%)
2 1390 bp 61.08 7.41 85.90
sw_8_scaffold_29636
Species: Micromonas sp. RCC299 (50%)
2 1309 bp 55.16 7.56 69.21
sw_8_scaffold_5170
Species: Physcomitrella patens (50%)
2 2327 bp 59.09 7.09 75.68
sw_8_scaffold_9549
Species: Micromonas sp. RCC299 (50%)
2 2510 bp 56.77 8.57 56.53
sw_8_scaffold_13237
Species: Coccomyxa subellipsoidea (50%)
2 1789 bp 57.63 7.66 94.07
sw_8_scaffold_1439
Species: Setaria italica (50%)
2 7548 bp 52.80 9.46 92.89
sw_8_scaffold_18076
Species: Genlisea aurea (50%)
2 1010 bp 56.14 7.72 93.27
sw_8_scaffold_2162
Species: Micromonas pusilla (50%)
2 3983 bp 48.63 6.10 71.33
sw_8_scaffold_4714
Species: Zea mays (50%)
2 2474 bp 55.38 9.18 75.79
sw_8_scaffold_5636
Species: Micromonas pusilla (50%)
2 2202 bp 57.18 10.31 92.37
sw_8_scaffold_16007
Species: Glycine max (50%)
2 1101 bp 54.86 8.72 41.69
sw_8_scaffold_18083
Species: Monoraphidium neglectum (50%)
2 1010 bp 58.61 6.83 78.42
sw_8_scaffold_2751
Species: Micromonas pusilla (50%)
2 3463 bp 57.38 8.69 82.21
sw_8_scaffold_12554
Species: Micromonas sp. RCC299 (50%)
2 1299 bp 60.97 8.39 104.62
sw_8_scaffold_10251
Species: Triticum aestivum (50%)
2 1490 bp 56.17 7.85 106.91
sw_8_scaffold_12787
Species: Ostreococcus tauri (50%)
2 1975 bp 48.86 5.82 49.22
sw_8_scaffold_10483
Species: Physcomitrella patens (50%)
2 1467 bp 55.62 6.88 55.01
sw_8_scaffold_11174
Species: Chlamydomonas reinhardtii (50%)
2 1408 bp 57.32 10.09 96.31
Displaying items 401-450 of 661 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.