ggKbase home page

sw_9_scaffold_490

Search features with annotation key words

Displaying 22 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_9_scaffold_490_1
Haloarcula hispanica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3..272
DNA (270bp) protein (90aa)
Chromosome segregation protein SMC n=1 Tax=Haloarcula hispanica N601 RepID=V5TSE2_HALHI
chromosome segregation protein SMC
Chromosome segregation protein SMC {ECO:0000313|EMBL:AHB68166.1}; TaxID=1417673 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula hispa
sw_9_scaffold_490_2
Natrinema versiforme, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

479..619
DNA (141bp) protein (47aa)
Transposase n=2 Tax=Natrinema pellirubrum (strain DSM 15624 / JCM 10476 / NCIMB 786) RepID=G4GDV7_NATP1
transposase
Transposase {ECO:0000313|EMBL:ELY62979.1}; TaxID=1227496 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema versiforme JCM 10478.;"
sw_9_scaffold_490_3
Natrialba aegyptia, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(686..919)
DNA (234bp) protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:ELY97812.1}; TaxID=1227491 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba aegyptia DSM 13077.;"
sw_9_scaffold_490_4
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1711..2469
DNA (759bp) protein (253aa)
arcR16; ArcR family transcription regulator id=24615455 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
ArcR family transcription regulator {ECO:0000313|EMBL:ESP86999.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candi
IclR family transcriptional regulator
sw_9_scaffold_490_5
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2476..3639)
DNA (1164bp) protein (388aa)
Crotonobetainyl-CoA:carnitine CoA-transferase /alpha-methylacyl-CoA racemase 2 n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QVZ8_9EURY
Crotonobetainyl-CoA:carnitine CoA-transferase /alpha-methylacyl-CoA racemase 2 {ECO:0000313|EMBL:EFW91411.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriac
L-carnitine dehydratase/bile acid-inducible protein F
sw_9_scaffold_490_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3719..4498
DNA (780bp) protein (260aa)
enoyl-CoA hydratase (EC:4.2.1.17) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
short chain enoyl-CoA hydratase (EC:4.2.1.17); K15019 3-hydroxypropionyl-coenzyme A dehydratase [EC:4.2.1.116] id=14625876 bin=bin7_NC10_sister species=Metallosphaera yellowstonensis genus=Metallosphaera taxon_order=Sulfolobales taxon_class=Thermoprotei phylum=Crenarchaeota tax=bin7_NC10_sister organism_group=NC10
Enoyl-CoA hydratase/carnithine racemase
sw_9_scaffold_490_7
Bacillus sp. OxB-1, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4581..5717)
DNA (1137bp) protein (379aa)
Cyclohexanecarboxyl-CoA dehydrogenase n=1 Tax=Bacillus bataviensis LMG 21833 RepID=K6DHL3_9BACI
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:BAQ09633.1}; TaxID=98228 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. (strain OxB-1).;"
sw_9_scaffold_490_8
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(5808..6584)
DNA (777bp) protein (259aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
Short-chain dehydrogenase/reductase SDR n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CKL5_SYNLT
short-chain dehydrogenase/reductase SDR
sw_9_scaffold_490_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

6746..7879
DNA (1134bp) protein (378aa)
propanoyl-CoA C-acyltransferase Tax=GWA2_Rokubacteria_70_23_curated
Propanoyl-CoA C-acyltransferase id=4051060 bin=GWF2_Methylomirabilis_70_14 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acaB-4; 3-ketoacyl-CoA thiolase
sw_9_scaffold_490_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7876..9510
DNA (1635bp) protein (545aa)
propanoyl-CoA C-acyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=GWA2_Rokubacteria_70_23_curated
propanoyl-CoA C-acyltransferase (EC:2.3.1.176)
Propanoyl-CoA C-acyltransferase id=4051058 bin=GWF2_Methylomirabilis_70_14 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sw_9_scaffold_490_11
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9771..10982
DNA (1212bp) protein (404aa)
phenylacetate--CoA ligase (EC:6.2.1.30)
Coenzyme A ligase n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0E5Y4_9EURY
Coenzyme A ligase {ECO:0000313|EMBL:ELZ43181.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum coriense DSM 10284.;"
sw_9_scaffold_490_12
halophilic archaeon J07HX5, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11224..11922
DNA (699bp) protein (233aa)
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein id=24655274 bin=uncultured_archaeon_J07HX5 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultured_archaeon_J07HX5
Uncharacterized protein {ECO:0000313|EMBL:ERG88774.1}; TaxID=1325472 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX5.;"
ABC transporter substrate-binding protein
sw_9_scaffold_490_13
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11975..12475
DNA (501bp) protein (167aa)
Extracellular ligand-binding receptor n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0E5V8_9EURY
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ELZ43175.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum corien
sw_9_scaffold_490_14
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12477..13316
DNA (840bp) protein (280aa)
phosphonate-transporting ATPase (EC:3.6.3.28)
ABC transporter ATP-binding protein n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0E5X9_9EURY
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ELZ43176.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum coriense
sw_9_scaffold_490_15
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

13319..14140
DNA (822bp) protein (274aa)
sulfate-transporting ATPase (EC:3.6.3.25)
High-affinity branched-chain amino acid transport ATP-binding protein livG n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0E8C2_9EURY
High-affinity branched-chain amino acid transport ATP-binding protein livG {ECO:0000313|EMBL:ELZ43177.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Ha
sw_9_scaffold_490_16
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14145..16220
DNA (2076bp) protein (692aa)
long-chain-fatty-acid--CoA ligase (EC:6.2.1.3)
Long-chain-fatty-acid--CoA ligase n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0E833_9EURY
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:ELZ43178.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum coriense D
sw_9_scaffold_490_17
halophilic archaeon J07HB67, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

16213..17127
DNA (915bp) protein (305aa)
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein id=24641132 bin=halophilic_archaeon_J07HB67 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HB67
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:ERH13980.1}; TaxID=1085029 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophili
ABC transporter permease
sw_9_scaffold_490_18
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

17185..18213
DNA (1029bp) protein (343aa)
ABC transporter permease n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0E5W2_9EURY
ABC transporter permease {ECO:0000313|EMBL:ELZ43180.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum coriense DSM 10284.
ABC transporter permease
sw_9_scaffold_490_19
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18303..18722
DNA (420bp) protein (140aa)
MaoC domain protein dehydratase n=1 Tax=Natrinema versiforme JCM 10478 RepID=L9XSL6_9EURY
Dehydratase {ECO:0000313|EMBL:GAN78476.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens H
acyl dehydratase
sw_9_scaffold_490_20
Natrinema sp. J7-2, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19034..19267
DNA (234bp) protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:AFO58808.1}; TaxID=406552 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema sp. (strain J7-2).;"
sw_9_scaffold_490_21
Halorubrum distributum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19325..19474)
DNA (150bp) protein (50aa)
Transposase n=2 Tax=Halorubrum distributum RepID=M0F1L6_9EURY
Transposase {ECO:0000313|EMBL:ELZ59019.1}; TaxID=1227468 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum distributum JCM 10118.;"
transposase
sw_9_scaffold_490_22
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19847..20299)
DNA (453bp) protein (151aa)
Uracil-DNA glycosylase {ECO:0000313|EMBL:CAI50635.2}; EC=3.2.2.27 {ECO:0000313|EMBL:CAI50635.2};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natrono
Uracil-DNA glycosylase n=2 Tax=Natronomonas pharaonis RepID=Q3IMM3_NATPD
uracil-DNA glycosylase-like protein
Displaying 22 items

View Taxonomy