ggKbase home page

sw_9_scaffold_460

Search features with annotation key words

Displaying items 1-30 of 37 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_9_scaffold_460_1

Not on your lists

1..93
DNA (93bp) protein (31aa)
Uncharacterized protein {ECO:0000313|EMBL:AEN04696.1}; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_9_scaffold_460_2
Haloarcula marismortui, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(90..815)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) RepID=Q5V1L9_HALMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAV46583.1}; TaxID=272569 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula marismortui (stra
sw_9_scaffold_460_3
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(860..1603)
DNA (744bp) protein (248aa)
Type 11 methyltransferase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D5U2_9EURY
Type 11 methyltransferase {ECO:0000313|EMBL:ELZ29499.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense
hypothetical protein
sw_9_scaffold_460_4
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1865..3241)
DNA (1377bp) protein (459aa)
Probable tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseud
Probable tRNA pseudouridine synthase D n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0LMB0_HALJP
tRNA pseudouridine synthase, TruD family
sw_9_scaffold_460_5
Haloferax sulfurifontis, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3286..3714)
DNA (429bp) protein (143aa)
FAD synthase {ECO:0000256|HAMAP-Rule:MF_02115, ECO:0000256|SAAS:SAAS00008287}; EC=2.7.7.2 {ECO:0000256|HAMAP-Rule:MF_02115, ECO:0000256|SAAS:SAAS00008290};; FMN adenylyltransferase {ECO:0000256|HAMAP-
tagD; glycerol-3-phosphate cytidyltransferase-like protein (EC:2.7.7.39)
FAD synthase n=1 Tax=Haloferax sulfurifontis ATCC BAA-897 RepID=M0IC13_9EURY
sw_9_scaffold_460_6
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3711..4199)
DNA (489bp) protein (163aa)
Proteasome Rpn11 subunit JAMM motif protein n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7P4J9_HALMD
proteasome Rpn11 subunit JAMM motif protein
Proteasome Rpn11 subunit JAMM motif protein {ECO:0000313|EMBL:ACV48021.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halom
sw_9_scaffold_460_7
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

4361..6259
DNA (1899bp) protein (633aa)
RecJ domain protein n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IQ93_NATPD
hypothetical protein
DHH/RecJ family phosphoesterase {ECO:0000313|EMBL:CAI49703.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas phara
sw_9_scaffold_460_8
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6304..7833
DNA (1530bp) protein (510aa)
Sensor/bat box HTH-10 family transcription regulator n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3INK9_NATPD
GAF domain-containing protein
Sensor/bat box HTH-10 family transcription regulator {ECO:0000313|EMBL:CAI50294.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" sourc
sw_9_scaffold_460_9
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7824..8975)
DNA (1152bp) protein (384aa)
aspC_3; aspartate aminotransferase (EC:2.6.1.1)
Pyridoxal phosphate-dependent aminotransferase (Probable aspartate aminotransferase) {ECO:0000313|EMBL:CAI50296.1}; EC=2.6.1.- {ECO:0000313|EMBL:CAI50296.1};; TaxID=348780 species="Archaea; Euryarchae
Pyridoxal phosphate-dependent aminotransferase (Probable aspartate aminotransferase) n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3INK7_NATPD
sw_9_scaffold_460_10
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8972..9151)
DNA (180bp) protein (60aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase n=2 Tax=Natronomonas pharaonis RepID=Q3INK6_NATPD
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00
sw_9_scaffold_460_11
unknown

Not on your lists

comp(9148..9309)
DNA (162bp) protein (54aa)

This feature has no annotations

sw_9_scaffold_460_12
Halorubrum saccharovorum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9374..10519)
DNA (1146bp) protein (382aa)
Water stress and Hypersensitive response domain protein n=1 Tax=Halorubrum saccharovorum DSM 1137 RepID=M0DLC7_9EURY
Water stress and Hypersensitive response domain protein {ECO:0000313|EMBL:ELZ36311.1}; TaxID=1227484 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source=
hypothetical protein
sw_9_scaffold_460_13
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10827..11012
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0NH42_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA55965.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
sw_9_scaffold_460_14
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11077..11982
DNA (906bp) protein (302aa)
cna; tRNA/rRNA cytosine-C5-methylase (EC:2.1.1.-)
tRNA and rRNA cytosine-C5-methylase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CR15_9EURY
tRNA and rRNA cytosine-C5-methylase {ECO:0000313|EMBL:ELZ25058.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex car
sw_9_scaffold_460_15
Haloferax elongans, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11979..12494
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Haloferax elongans ATCC BAA-1513 RepID=M0HK97_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ84980.1}; TaxID=1230453 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax elongans ATCC BAA-1513
hypothetical protein
sw_9_scaffold_460_16
unknown

Not on your lists

12606..13100
DNA (495bp) protein (165aa)

This feature has no annotations

sw_9_scaffold_460_17
Halorubrum aidingense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13097..13246)
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Halorubrum aidingense JCM 13560 RepID=M0PDN2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA68247.1}; TaxID=1230454 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum aidingense JCM 13560
hypothetical protein
sw_9_scaffold_460_18
Haloarcula amylolytica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13200..14543)
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0KSC0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA23094.1}; TaxID=1227452 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula amylolytica JCM
hypothetical protein
sw_9_scaffold_460_19
Haloarcula californiae, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14543..15772)
DNA (1230bp) protein (410aa)
DNA repair protein Rad25 n=1 Tax=Haloarcula californiae ATCC 33799 RepID=M0K2Z3_9EURY
DNA repair protein Rad25 {ECO:0000313|EMBL:EMA14240.1}; TaxID=662475 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula californiae ATCC
rad25; DNA repair protein Rad25
sw_9_scaffold_460_20
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(16081..16518)
DNA (438bp) protein (146aa)
Transcription elongation factor Spt5 n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CVY0_9EURY
Transcription elongation factor Spt5 {ECO:0000256|HAMAP-Rule:MF_00950}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimple
nusG; transcription antitermination protein NusG
sw_9_scaffold_460_21
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16518..16691)
DNA (174bp) protein (58aa)
Protein translocase subunit SecE n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7P127_HALMD
protein translocase SEC61 complex subunit gamma
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; Protein transport protein Sec61 gamma subunit homolog {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=485914 species="Archaea; Euryarchaeot
sw_9_scaffold_460_22
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16822..18030)
DNA (1209bp) protein (403aa)
Cell division protein FtsZ n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XN79_NATM8
ftsZ1; cell division protein FtsZ, type I
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU003360}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas
sw_9_scaffold_460_23
Halorubrum saccharovorum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18316..18885)
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Halorubrum sp. T3 RepID=UPI0003768EDC
C4-dicarboxylate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKF40106.1}; TaxID=2248 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source=
sw_9_scaffold_460_24
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19026..20360)
DNA (1335bp) protein (445aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00562, ECO:0000256|SAAS:SAAS00160314}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00562, ECO:0000256|SAAS:SAAS00160312};; TaxID=1227487 species="Archa
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0CV94_9EURY
hypothetical protein
sw_9_scaffold_460_25
unknown

Not on your lists

comp(20591..20824)
DNA (234bp) protein (78aa)

This feature has no annotations

sw_9_scaffold_460_26
Haloarcula californiae, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20977..22686
DNA (1710bp) protein (570aa)
DNA polymerase IV n=1 Tax=Haloarcula californiae ATCC 33799 RepID=M0JUP1_9EURY
polX; DNA polymerase IV
DNA polymerase IV {ECO:0000313|EMBL:EMA11684.1}; TaxID=662475 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula californiae ATCC 33799.
sw_9_scaffold_460_27
Natronococcus jeotgali, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22683..23147
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Natronococcus jeotgali DSM 18795 RepID=L9X6L3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY57350.1}; TaxID=1227498 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcus jeotgali DSM 187
hypothetical protein
sw_9_scaffold_460_28
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(23144..24088)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XYR8_NATM8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCQ35273.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas moolapensis (
sw_9_scaffold_460_29
Halorhabdus utahensis, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

24184..25149
DNA (966bp) protein (322aa)
Nucleotidyl transferase n=1 Tax=Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) RepID=C7NQE5_HALUD
Nucleotidyl transferase
Nucleotidyl transferase {ECO:0000313|EMBL:ACV12871.1}; TaxID=519442 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus utahensis (stra
sw_9_scaffold_460_30
Natrinema versiforme, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(25154..25870)
DNA (717bp) protein (239aa)
ATP binding protein n=1 Tax=Natrinema versiforme JCM 10478 RepID=L9YCL3_9EURY
ATP binding protein {ECO:0000313|EMBL:ELY71447.1}; TaxID=1227496 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema versiforme JCM 10478.;"
metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein
Displaying items 1-30 of 37 in total

View Taxonomy