ggKbase home page

sw_9_scaffold_546

Search features with annotation key words

Displaying 18 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_9_scaffold_546_1
Halorubrum hochstenium, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2..241
DNA (240bp) protein (80aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133, ECO:0000313|EMBL:ELZ57425.1};; TaxID=1227481 species="Archaea; Euryarchaeota; Halobacter
trpB2; probable tryptophan synthase beta subunit (EC:4.2.1.20)
Tryptophan synthase beta chain n=1 Tax=Halorubrum tebenquichense DSM 14210 RepID=M0E5J7_9EURY
sw_9_scaffold_546_2
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

369..896
DNA (528bp) protein (176aa)
ftc; formimidoyltetrahydrofolate cyclodeaminase (EC:4.3.1.4)
Formimidoyltetrahydrofolate cyclodeaminase n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0L5P3_HALJP
Formimidoyltetrahydrofolate cyclodeaminase {ECO:0000313|EMBL:EMA27759.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcu
sw_9_scaffold_546_3
Haloarcula marismortui, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(898..1167)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) RepID=Q5UYW0_HALMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAV47543.1}; TaxID=272569 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula marismortui (stra
sw_9_scaffold_546_4
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1284..1793)
DNA (510bp) protein (170aa)
Probable thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1230451 species="Archaea; Euryarchaeo
Probable thymidylate kinase n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KME1_HALAR
thymidylate kinase
sw_9_scaffold_546_5
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1886..2551
DNA (666bp) protein (222aa)
Transcriptional activator, TenA family protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0C423_9EURY
Transcriptional activator, TenA family protein {ECO:0000313|EMBL:ELZ17428.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloter
4-amino-5-aminomethyl-2-methylpyrimidine deaminase
sw_9_scaffold_546_6
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2539..2802
DNA (264bp) protein (88aa)
tenA-2; transcriptional activator TenA (EC:3.5.99.2)
Putative transcription activator n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DA87_9EURY
Putative transcription activator {ECO:0000313|EMBL:ELZ31637.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum p
sw_9_scaffold_546_7
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2803..4338
DNA (1536bp) protein (512aa)
Na+/solute symporter n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0C2J1_9EURY
Na+/solute symporter {ECO:0000313|EMBL:ELZ17430.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena limicola JCM 13563.
Na+/solute symporter
sw_9_scaffold_546_8
unknown

Not on your lists

4338..4454
DNA (117bp) protein (39aa)

This feature has no annotations

sw_9_scaffold_546_9
Haloarcula marismortui, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

4531..5760
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) RepID=Q5V5I1_HALMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAV45221.1}; TaxID=272569 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula marismortui (stra
sw_9_scaffold_546_10
Natrinema pallidum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5895..6305
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Natrinema pallidum DSM 3751 RepID=L9YKP2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY73478.1}; TaxID=1227495 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema pallidum DSM 3751.;"
hypothetical protein
sw_9_scaffold_546_11
Natronorubrum bangense, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6339..7034)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Natronorubrum bangense JCM 10635 RepID=L9WGT8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY48476.1}; TaxID=1227500 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum bangense JCM 106
hypothetical protein
sw_9_scaffold_546_12
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7047..7865)
DNA (819bp) protein (273aa)
short-chain dehydrogenase/reductase SDR id=24647018 bin=halophilic_archaeon_J07HX64 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HX64
Short-chain dehydrogenase {ECO:0000313|EMBL:ERH11187.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
short-chain alcohol dehydrogenase
sw_9_scaffold_546_13
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7945..8736)
DNA (792bp) protein (264aa)
Endonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; EC=3.1.21.7 {ECO:0000256|HAMAP-Rule:MF_00801};; Deoxyinosine 3'endonuclease {ECO:0000256|HAMAP-Rule:MF_00801}; Deoxyribonuclease V {ECO:0000256|HAMAP-
nfi; endonuclease V (EC:3.1.21.7)
Endonuclease V n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CW30_9EURY
sw_9_scaffold_546_14
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8738..9700)
DNA (963bp) protein (321aa)
Rhomboid family protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CVZ9_9EURY
Rhomboid family protein {ECO:0000313|EMBL:ELZ27416.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
Rhomboid family protein
sw_9_scaffold_546_15
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9844..11364
DNA (1521bp) protein (507aa)
Carboxypeptidase Taq n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KGY2_HALAR
Carboxypeptidase Taq {ECO:0000313|EMBL:EMA19070.1}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula argentinensis DSM 1
cxp; carboxypeptidase
sw_9_scaffold_546_16
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11372..12415)
DNA (1044bp) protein (348aa)
tcbD; chloromuconate cycloisomerase (EC:5.5.1.7)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QNL9_9EURY
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:EFW94136.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Ha
sw_9_scaffold_546_17
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12412..13422)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N735_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA53676.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
hypothetical protein
sw_9_scaffold_546_18
unknown

Not on your lists

comp(13509..13739)
DNA (231bp) protein (77aa)

This feature has no annotations

Displaying 18 items

View Taxonomy