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S_p1_S3_coassembly_k141_1719744

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Displaying items 1-30 of 612 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_1719744_trna_1
unknown

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1..68
DNA (68bp)
transferRNA Pseudo
S_p1_S3_coassembly_k141_1719744_1
AR10, Diapherotrites, DPANN, Archaea

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568..975
DNA (408bp) protein (136aa)
hypothetical protein
id=5241570 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p1_S3_coassembly_k141_1719744_2

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comp(1006..1563)
DNA (558bp) protein (186aa)
hypothetical protein
seg bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Uncharacterized protein {ECO:0000313|EMBL:AJF60559.1}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p1_S3_coassembly_k141_1719744_3
AR10, Diapherotrites, DPANN, Archaea

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comp(1686..1976)
DNA (291bp) protein (97aa)
Putative uncharacterized protein bin=GWA2_Ignavibacteria-rel_35_8 species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
hypothetical protein
Tax=AR10
S_p1_S3_coassembly_k141_1719744_4
AR10, Diapherotrites, DPANN, Archaea

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comp(2196..3170)
DNA (975bp) protein (325aa)
integrase/recombinase xerd, integrase/recombinase XerD
xerD-like; integrase/recombinase xerd; K04763 integrase/recombinase XerD bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p1_S3_coassembly_k141_1719744_5
unknown

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3282..3521
DNA (240bp) protein (80aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1719744_6
AR10, Diapherotrites, DPANN, Archaea

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3661..3822
DNA (162bp) protein (54aa)
hypothetical protein
id=5241627 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p1_S3_coassembly_k141_1719744_7

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comp(3982..4266)
DNA (285bp) protein (95aa)
Replication factor A1 {ECO:0000313|EMBL:KHO54302.1}; species="Archaea.;" source="archaeon GW2011_AR21.;"
replication factor A1
single-stranded DNA-binding protein; K07466 replication factor A1 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p1_S3_coassembly_k141_1719744_8
AR10, Diapherotrites, DPANN, Archaea

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4439..5194
DNA (756bp) protein (252aa)
hypothetical protein
hypothetical protein bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p1_S3_coassembly_k141_1719744_9

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5527..7194
DNA (1668bp) protein (556aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000256|SAAS:SAAS00016154}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000256|SAAS:SAAS00088701};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p1_S3_coassembly_k141_1719744_10
unknown

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comp(7209..7715)
DNA (507bp) protein (169aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1719744_11

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7987..8355
DNA (369bp) protein (123aa)
add45; ribosomal protein L7Ae/L30e/S12e/Glarge subunit ribosomal protein L7Ae
ribosomal protein L7Ae/L30e/S12e/Gadd45; K02936 large subunit ribosomal protein L7Ae bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L7Ae {ECO:0000256|HAMAP-Rule:MF_00326}; Ribosomal protein L8e {ECO:0000256|HAMAP-Rule:MF_00326}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p1_S3_coassembly_k141_1719744_12

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8363..8581
DNA (219bp) protein (73aa)
30S ribosomal protein S28, small subunit ribosomal protein S28e
rps28e; 30S ribosomal protein S28; K02979 small subunit ribosomal protein S28e bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
30S ribosomal protein S28e {ECO:0000256|HAMAP-Rule:MF_00292}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p1_S3_coassembly_k141_1719744_13
RBG_13_Euryarchaeota_57_23_curated, Euryarchaeota, Archaea

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8606..8971
DNA (366bp) protein (122aa)
50S ribosomal protein L24e
50S ribosomal protein L24; K02896 large subunit ribosomal protein L24e bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tax=RBG_13_Euryarchaeota_57_23_curated
S_p1_S3_coassembly_k141_1719744_14
AR10, Diapherotrites, DPANN, Archaea

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8973..9458
DNA (486bp) protein (162aa)
nucleoside-diphosphate kinase (EC:2.7.4.6)
nucleoside diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p1_S3_coassembly_k141_1719744_15
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

9427..9915
DNA (489bp) protein (163aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase, dUTP pyrophosphatase (EC:3.6.1.23)
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23); K01520 dUTP pyrophosphatase [EC:3.6.1.23] bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_1719744_16

Not on your lists

9940..11724
DNA (1785bp) protein (595aa)
translation initiation factor IF-2, translation initiation factor 5B
InfB_2; translation initiation factor IF-2; K03243 translation initiation factor 5B bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Probable translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p1_S3_coassembly_k141_1719744_17

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11721..12206
DNA (486bp) protein (162aa)
30S ribosomal protein S6e, small subunit ribosomal protein S6e
rps6e; 30S ribosomal protein S6e; K02991 small subunit ribosomal protein S6e bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
30S ribosomal protein S6e, small subunit ribosomal protein S6e {ECO:0000313|EMBL:AJF60387.1}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p1_S3_coassembly_k141_1719744_18

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12258..13640
DNA (1383bp) protein (461aa)
Translation initiation factor 2 subunit 3 {ECO:0000313|EMBL:KHO55203.1}; species="Archaea.;" source="archaeon GW2011_AR21.;"
translation initiation factor 2 subunit 3
translation initiation factor 2 subunit gamma (aeif-2g); K03242 translation initiation factor 2 subunit 3 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p1_S3_coassembly_k141_1719744_19

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13624..14025
DNA (402bp) protein (134aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO55204.1}; species="Archaea.;" source="archaeon GW2011_AR21.;"
PilT protein
PilT domain protein bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p1_S3_coassembly_k141_1719744_20

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14036..14653
DNA (618bp) protein (206aa)
DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:KHO55205.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KHO55205.1};; species="Archaea.;" source="archaeon GW2011_AR21.;"
DNA-directed RNA polymerase subunit E' (EC:2.7.7.6)
DNA-directed RNA polymerase (EC:2.7.7.6); K03049 DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p1_S3_coassembly_k141_1719744_21

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14678..14872
DNA (195bp) protein (65aa)
transcription elongation factor Spt4/RpoE2, zinc finger protein, DNA-directed RNA polymerase subunit E' (EC:2.7.7.6)
Spt4; transcription elongation factor Spt4/RpoE2, zinc finger protein; K03050 DNA-directed RNA polymerase subunit E" [EC:2.7.7.6] bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; species="Archaea.;" source="archaeon GW2011_AR21.;"
S_p1_S3_coassembly_k141_1719744_22

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14881..15261
DNA (381bp) protein (127aa)
30S ribosomal protein S24E, small subunit ribosomal protein S24e
rps24e; 30S ribosomal protein S24E; K02974 small subunit ribosomal protein S24e bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
30S ribosomal protein S24e {ECO:0000256|HAMAP-Rule:MF_00545}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p1_S3_coassembly_k141_1719744_23

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15282..15503
DNA (222bp) protein (74aa)
30S ribosomal protein S27ae {ECO:0000256|HAMAP-Rule:MF_00777}; species="Archaea.;" source="archaeon GW2011_AR21.;"
small subunit ribosomal protein S27Ae
30S ribosomal protein S27; K02977 small subunit ribosomal protein S27Ae bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p1_S3_coassembly_k141_1719744_24
AR10, Diapherotrites, DPANN, Archaea

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15545..16102
DNA (558bp) protein (186aa)
CAAX protease self-immunity
CAAX protease self-immunity bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p1_S3_coassembly_k141_1719744_25

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16099..16716
DNA (618bp) protein (206aa)
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
tRNA threonylcarbamoyladenosine biosynthesis protein {ECO:0000313|EMBL:KHO47786.1}; species="Archaea.;" source="archaeon GW2011_AR5.;"
tRNA threonylcarbamoyladenosine biosynthesis protein
S_p1_S3_coassembly_k141_1719744_26
R_OD1_Uhrbacteria_47_17, Uhrbacteria, Parcubacteria, Bacteria

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comp(16708..17253)
DNA (546bp) protein (182aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Uhrbacteria_47_17_curated
S_p1_S3_coassembly_k141_1719744_27

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17322..18314
DNA (993bp) protein (331aa)
DNA-binding/iron metalloprotein/AP endonuclease, tRNA threonylcarbamoyladenosine biosynthesis protein
gcp; DNA-binding/iron metalloprotein/AP endonuclease; K15900 tRNA threonylcarbamoyladenosine biosynthesis protein bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
DNA-binding/iron metalloprotein/AP endonuclease, tRNA threonylcarbamoyladenosine biosynthesis protein {ECO:0000313|EMBL:AJF60396.1}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p1_S3_coassembly_k141_1719744_28
unknown

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comp(18345..18914)
DNA (570bp) protein (190aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1719744_29
unknown

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19117..19836
DNA (720bp) protein (240aa)

This feature has no annotations

Displaying items 1-30 of 612 in total

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