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S_p1_S3_coassembly_k141_122271

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_122271_1
R_RIF_OD1_09_43_27, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(1..1422)
DNA (1422bp) protein (474aa)
prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase Tax=Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1) RepID=Q2FQ52_METHJ
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_09_43_27_curated
S_p1_S3_coassembly_k141_122271_2
R_OP11_Gottesmanbacteria_39_11, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(1419..2549)
DNA (1131bp) protein (377aa)
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
chorismate synthase (EC:4.2.3.5)
Tax=RIFCSPHIGHO2_02_FULL_OP11_Gottesmanbacteria_39_11_curated
S_p1_S3_coassembly_k141_122271_3
CG_Kuenen_03, Kuenenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2546..3373)
DNA (828bp) protein (276aa)
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25] bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
shikimate dehydrogenase (EC:1.1.1.25)
Tax=CG_Kuenen_03
S_p1_S3_coassembly_k141_122271_4
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3363..3857)
DNA (495bp) protein (165aa)
aroK; shikimate kinase (EC:2.7.1.71)
Shikimate kinase Tax=Candidatus Nitrospira defluvii RepID=D8PAG5_9BACT
Tax=RBG_13_Deltaproteobacteria_61_14_curated
S_p1_S3_coassembly_k141_122271_5
R_OP11_Gottesmanbacteria_39_12b, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(3875..5155)
DNA (1281bp) protein (427aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NGB6_DESAR
Tax=RIFCSPLOWO2_01_FULL_OP11_Gottesmanbacteria_39_12b_curated
S_p1_S3_coassembly_k141_122271_6
R_OP11_Gottesmanbacteria_39_10, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(5217..5678)
DNA (462bp) protein (154aa)
3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10] bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
3-dehydroquinate dehydratase (EC:4.2.1.10)
Tax=RIFCSPHIGHO2_01_FULL_OP11_Gottesmanbacteria_39_10_curated
S_p1_S3_coassembly_k141_122271_7
R_OD1_Uhrbacteria_54_37, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(5675..6739)
DNA (1065bp) protein (355aa)
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase Tax=Thermodesulfobacterium geofontis (strain OPB45) RepID=F8C417_THEGP
Tax=RIFCSPLOWO2_02_FULL_OD1_Uhrbacteria_54_37_curated
S_p1_S3_coassembly_k141_122271_8
R_OP11_Roizmanbacteria_36_11, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

comp(6742..7494)
DNA (753bp) protein (251aa)
chorismate mutase (EC:5.4.99.5)
Putative uncharacterized protein Tax=Alistipes putredinis DSM 17216 RepID=B0MX08_9BACT bin=ACD12 species=Alistipes putredinis genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
Tax=RIFCSPLOWO2_02_FULL_OP11_Roizmanbacteria_36_11_curated
S_p1_S3_coassembly_k141_122271_9
R_OP11_Levybacteria_36_8b, Levybacteria, Microgenomates, Bacteria

Not on your lists


comp(7796..8158)
DNA (363bp) protein (121aa)
50S ribosomal protein L20 Tax=uncultured bacterium RepID=K2DJS0_9BACT
50S ribosomal protein L20
Tax=RIFCSPLOWO2_02_FULL_OP11_Levybacteria_36_8b_curated
S_p1_S3_coassembly_k141_122271_10
R_OP11_Levybacteria_37_13, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(8322..8918)
DNA (597bp) protein (199aa)
translation initiation factor IF-3; K02520 translation initiation factor IF-3 bin=ACD37 species=ACD37 genus=ACD37 taxon_order=ACD37 taxon_class=ACD37 phylum=OP11 tax=ACD37 organism_group=OP11 (Microgenomates) organism_desc=OP11
translation initiation factor IF-3
Tax=RIFCSPHIGHO2_02_FULL_OP11_Levybacteria_37_13_curated
S_p1_S3_coassembly_k141_122271_11
R_OP11_Gottesmanbacteria_39_11, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(8902..10644)
DNA (1743bp) protein (581aa)
threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] bin=bin11_novelCP species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=bin11_novelCP organism_group=Unknown_CP
thrS; threonyl-tRNA synthetase
Tax=RIFCSPHIGHO2_02_FULL_OP11_Gottesmanbacteria_39_11_curated
S_p1_S3_coassembly_k141_122271_12
GWB1_OP11_37_8, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(10814..11182)
DNA (369bp) protein (123aa)
Uncharacterized protein Tax=Caldicellulosiruptor owensensis (strain ATCC 700167 / DSM 13100 / OL) RepID=E4Q1V1_CALOW
Uncharacterized protein {ECO:0000313|EMBL:KKQ42262.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Levybacteria) bacterium GW2011_GWB1_37_8.;"
hypothetical protein
S_p1_S3_coassembly_k141_122271_13
GWA1_OP11_42_6_partial, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

11229..12563
DNA (1335bp) protein (445aa)
Threonine synthase {ECO:0000313|EMBL:KKS65345.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA1_42_6.;"
Threonine synthase bin=GWC2_CP_Nitrospirae-rel_42_7 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
thrC; threonine synthase
S_p1_S3_coassembly_k141_122271_14
R_RIF_OD1_06_38_12, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(12487..13107)
DNA (621bp) protein (207aa)
hypothetical protein bin=ACD43 species=ACD43 genus=ACD43 taxon_order=ACD43 taxon_class=ACD43 phylum=OD1 tax=ACD43 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_06_38_12_curated
S_p1_S3_coassembly_k141_122271_15

Not on your lists

13134..15620
DNA (2487bp) protein (829aa)
thrA; bifunctional aspartokinase I/homoserine dehydrogenase I (EC:2.7.2.4); K12524 bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Bifunctional protein: aspartokinase I, homoserine dehydrogenase {ECO:0000313|EMBL:KKR10048.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_39_18.;"
aspartate kinase
S_p1_S3_coassembly_k141_122271_16

Not on your lists

15617..16690
DNA (1074bp) protein (358aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2BY07_9BACT
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:KKR10047.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_39_18.;"
aspartate-semialdehyde dehydrogenase
S_p1_S3_coassembly_k141_122271_17
RHI_OP11_Levybacteria_38_12, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(16692..17264)
DNA (573bp) protein (191aa)
metal dependent phosphohydrolase bin=ACD50 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=ACD50 organism_group=OP11 (Microgenomates) organism_desc=OP11
metal dependent phosphohydrolase
Tax=RIFCSPHIGHO2_12_FULL_OP11_Levybacteria_38_12_curated
S_p1_S3_coassembly_k141_122271_trna_1
unknown

Not on your lists

17455..17526
DNA (72bp)
transferRNA Val
S_p1_S3_coassembly_k141_122271_18
RHI_OP11_Levybacteria_38_12, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(17581..18825)
DNA (1245bp) protein (415aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2EUP3_9BACT
threonine dehydratase
Tax=RIFCSPHIGHO2_12_FULL_OP11_Levybacteria_38_12_curated
S_p1_S3_coassembly_k141_122271_19
R_OP11_Roizmanbacteria_41_22, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

comp(18822..19895)
DNA (1074bp) protein (358aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
hypothetical protein Tax=Gracilimonas tropica RepID=UPI0003714D2D
Tax=RIFCSPLOWO2_01_FULL_OP11_Roizmanbacteria_41_22_curated
S_p1_S3_coassembly_k141_122271_20
RHI_OP11_Levybacteria_38_12, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(19919..20527)
DNA (609bp) protein (203aa)
3-isopropylmalate dehydratase small subunit Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PC97_CHIPD
3-isopropylmalate dehydratase small subunit
Tax=RIFCSPHIGHO2_12_FULL_OP11_Levybacteria_38_12_curated
S_p1_S3_coassembly_k141_122271_21
RHI_OP11_Levybacteria_38_12, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(20599..22008)
DNA (1410bp) protein (470aa)
3-isopropylmalate dehydratase large subunit Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PC95_CHIPD
isopropylmalate isomerase large subunit
Tax=RIFCSPHIGHO2_12_FULL_OP11_Levybacteria_38_12_curated
S_p1_S3_coassembly_k141_122271_22
RHI_OP11_Levybacteria_38_12, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(22029..22388)
DNA (360bp) protein (120aa)
Putative endoribonuclease L-PSP Tax=Enterococcus italicus DSM 15952 RepID=E6LHV0_9ENTE
endoribonuclease L-PSP
Tax=RIFCSPHIGHO2_12_FULL_OP11_Levybacteria_38_12_curated
S_p1_S3_coassembly_k141_122271_23
RHI_OP11_Levybacteria_38_12, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(22497..23753)
DNA (1257bp) protein (419aa)
Putative aminotransferase bin=GWF2_Lentisphaerae_50_93 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
putative aminotransferase
Tax=RIFCSPHIGHO2_12_FULL_OP11_Levybacteria_38_12_curated
S_p1_S3_coassembly_k141_122271_24
RHI_OP11_Levybacteria_38_12, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(23796..25541)
DNA (1746bp) protein (582aa)
dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] bin=bin5_DeltaP species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=bin5_DeltaP organism_group=Deltaproteobacteria
ilvD; Dihydroxy-acid dehydratase (EC:4.2.1.9)
Tax=RIFCSPHIGHO2_12_FULL_OP11_Levybacteria_38_12_curated
S_p1_S3_coassembly_k141_122271_25
R_OP11_Roizmanbacteria_41_22, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

comp(25538..27028)
DNA (1491bp) protein (497aa)
2-isopropylmalate synthase Tax=Anaerophaga thermohalophila RepID=UPI00036A322D
2-isopropylmalate synthase
Tax=RIFCSPLOWO2_01_FULL_OP11_Roizmanbacteria_41_22_curated
S_p1_S3_coassembly_k141_122271_26

Not on your lists

comp(27018..28103)
DNA (1086bp) protein (362aa)
Ketol-acid reductoisomerase {ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|SAAS:SAAS00051427};; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ketol-acid reductoisomerase (EC:1.1.1.86)
Uncharacterized protein Tax=uncultured bacterium RepID=K2E6Q3_9BACT
S_p1_S3_coassembly_k141_122271_27
RHI_OP11_Levybacteria_38_12, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(28197..29882)
DNA (1686bp) protein (562aa)
Aromatic amino acid aminotransferase bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
class I/II aminotransferase
Tax=RIFCSPHIGHO2_12_FULL_OP11_Levybacteria_38_12_curated
S_p1_S3_coassembly_k141_122271_28
RHI_OP11_Levybacteria_38_12, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(29882..31561)
DNA (1680bp) protein (560aa)
acetolactate synthase Tax=Dyadobacter beijingensis RepID=UPI000380A821
acetolactate synthase large subunit
Tax=RIFCSPHIGHO2_12_FULL_OP11_Levybacteria_38_12_curated
S_p1_S3_coassembly_k141_122271_29
RHI_OP11_Levybacteria_38_12, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(31630..32556)
DNA (927bp) protein (309aa)
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
branched-chain amino acid aminotransferase
Tax=RIFCSPHIGHO2_12_FULL_OP11_Levybacteria_38_12_curated
Displaying items 1-30 of 32 in total

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