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S_p1_S3_coassembly_k141_397538

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_397538_1
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists

comp(3..356)
DNA (354bp) protein (118aa)
Uncharacterized protein bin=GWF2_OP3_43_52 species=Thermoanaerobacterium thermosaccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
putative nucleotidyltransferase
Tax=GWF2_WOR_2_43_52_curated
S_p1_S3_coassembly_k141_397538_2
GWA2_OD1_45_15_partial, Parcubacteria, Bacteria

Not on your lists

comp(425..2782)
DNA (2358bp) protein (786aa)
Copper-transporting P-type ATPase Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YVI4_METPS
Copper-translocating P-type ATPase CopA {ECO:0000313|EMBL:KKT96656.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_45_15.;"
copper-transporting P-type ATPase
S_p1_S3_coassembly_k141_397538_3
RLO_OD1_Nomurabacteria_44_11, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

2936..3103
DNA (168bp) protein (56aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_44_11_curated
S_p1_S3_coassembly_k141_397538_4
R_RIF_OD1_12_45_17b, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(3155..3589)
DNA (435bp) protein (145aa)
nitrous-oxide reductase (N(2)or) (N2O reductase) (EC:1.7.99.6); K00376 nitrous-oxide reductase [EC:1.7.99.6] bin=ACD50 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=ACD50 organism_group=OP11 (Microgenomates) organism_desc=OP11
cytochrome c oxidase subunit ii
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_12_45_17b_curated
S_p1_S3_coassembly_k141_397538_5
R_RIF_OD1_12_48_12, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(3586..5757)
DNA (2172bp) protein (724aa)
Uncharacterized protein (Fragment) Tax=uncultured bacterium RepID=K2B9F6_9BACT
Cytochrome c biogenesis protein transmembrane region
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_12_48_12_curated
S_p1_S3_coassembly_k141_397538_6
R_RIF_OD1_13_59_16, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(5744..6115)
DNA (372bp) protein (124aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_13_59_16_curated
S_p1_S3_coassembly_k141_397538_7
R_OD1_Yanofskybacteria_39_8b, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(6112..6375)
DNA (264bp) protein (88aa)
Thioredoxin-like bin=ACD50 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=ACD50 organism_group=OP11 (Microgenomates) organism_desc=OP11
glutaredoxin/thioredoxin-like protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_39_8b_curated
S_p1_S3_coassembly_k141_397538_8
R_OD1_Wolfebacteria_44_18, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

6476..7219
DNA (744bp) protein (248aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000375F917
protein-disulfide isomerase
Tax=RIFCSPLOWO2_01_FULL_OD1_Wolfebacteria_44_18_curated
S_p1_S3_coassembly_k141_397538_9
R_OD1_Giovannonibacteria_46_13, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(7300..7890)
DNA (591bp) protein (197aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003644974
paaX; repressor in ring oxydation complex/phenylacetic acid degradation pathway-like protein (paaX)
Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_46_13_curated
S_p1_S3_coassembly_k141_397538_10
unknown

Not on your lists

comp(8159..8440)
DNA (282bp) protein (94aa)

This feature has no annotations

S_p1_S3_coassembly_k141_397538_11
GWF2_OD1_52_12, Parcubacteria, Bacteria

Not on your lists

comp(8526..9632)
DNA (1107bp) protein (369aa)
RNA polymerase sigma factor {ECO:0000313|EMBL:KKW24011.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_52_12.;"
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RpoD subfamily RNA polymerase sigma-70 subunit
S_p1_S3_coassembly_k141_397538_12
RIFOXYD1_FULL_OD1_46_19_curated, Parcubacteria, Bacteria

Not on your lists

comp(9629..11362)
DNA (1734bp) protein (578aa)
dnaG; DNA primase; K02316 DNA primase [EC:2.7.7.-] bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA primase
Tax=RIFOXYD1_FULL_OD1_46_19_curated
S_p1_S3_coassembly_k141_397538_13
RIFOXYB1_FULL_OD1_42_16_curated, Parcubacteria, Bacteria

Not on your lists

comp(11337..14942)
DNA (3606bp) protein (1202aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
id=5226922 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Tax=RIFOXYB1_FULL_OD1_42_16_curated
S_p1_S3_coassembly_k141_397538_14

Not on your lists

comp(14947..18102)
DNA (3156bp) protein (1052aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:KKS89620.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_43_11b.;"
id=5226921 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
S_p1_S3_coassembly_k141_397538_15
unknown

Not on your lists

comp(18348..19370)
DNA (1023bp) protein (341aa)

This feature has no annotations

S_p1_S3_coassembly_k141_397538_16
RIFOXYD1_FULL_OD1_46_19_curated, Parcubacteria, Bacteria

Not on your lists

comp(19612..20274)
DNA (663bp) protein (221aa)
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase bin=GWC1_OD1_38_17 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
Tax=RIFOXYD1_FULL_OD1_46_19_curated
S_p1_S3_coassembly_k141_397538_17

Not on your lists

comp(20284..20610)
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS89618.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_43_11b.;"
hypothetical protein; K06960 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
S_p1_S3_coassembly_k141_397538_18
R_OD1_Jorgensenbacteria_45_20, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

20804..22306
DNA (1503bp) protein (501aa)
methyltransferase (EC:2.1.1.-)
Methyltransferase Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N0X3_ANATU
Tax=RIFCSPHIGHO2_02_FULL_OD1_Jorgensenbacteria_45_20_curated
S_p1_S3_coassembly_k141_397538_19
R_OD1_Jorgensenbacteria_45_20, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(22303..22869)
DNA (567bp) protein (189aa)
Type II restriction endonuclease DdeI Tax=Helicobacter pylori PZ5086 RepID=T2SJS1_HELPX
restriction endonuclease
Tax=RIFCSPHIGHO2_02_FULL_OD1_Jorgensenbacteria_45_20_curated
S_p1_S3_coassembly_k141_397538_20
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists


comp(22921..23238)
DNA (318bp) protein (106aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI000369A75F
30S ribosomal protein S16
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
S_p1_S3_coassembly_k141_397538_21

Not on your lists

23274..25211
DNA (1938bp) protein (646aa)
Ribonuclease R {ECO:0000313|EMBL:KKS86795.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_43_11.;"
id=5226915 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
ribonuclease R
S_p1_S3_coassembly_k141_397538_22
GWA1_OD1_51_14_curated, Parcubacteria, Bacteria

Not on your lists

comp(25232..27460)
DNA (2229bp) protein (743aa)
Smc; chromosome segregation ATPase; K03529 chromosome segregation protein bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
smc; chromosome segregation protein SMC
Tax=GWA1_OD1_51_14_curated
S_p1_S3_coassembly_k141_397538_23
RIFOXYD1_FULL_OD1_46_19_curated, Parcubacteria, Bacteria

Not on your lists

comp(27464..28168)
DNA (705bp) protein (235aa)
ribonuclease III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3] bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
putative ribonuclease III (EC:3.1.26.3)
Tax=RIFOXYD1_FULL_OD1_46_19_curated
S_p1_S3_coassembly_k141_397538_24
GWA1_OD1_51_14_curated, Parcubacteria, Bacteria

Not on your lists

comp(28165..29049)
DNA (885bp) protein (295aa)
NusB antitermination factor; K03625 N utilization substance protein B bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
putative transcription termination factor
Tax=GWA1_OD1_51_14_curated
S_p1_S3_coassembly_k141_397538_25
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(29372..29629)
DNA (258bp) protein (86aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
S_p1_S3_coassembly_k141_397538_26
R_RIF_OD1_06_43_17b, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(29616..29792)
DNA (177bp) protein (59aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_06_43_17b_curated
S_p1_S3_coassembly_k141_397538_27
RHI_RIF_OD1_10_44_12b, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

29866..30972
DNA (1107bp) protein (369aa)
glycoside hydrolase 15-like protein; K07190 phosphorylase kinase alpha/beta subunit bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
glycoside hydrolase family 15
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_10_44_12b_curated
S_p1_S3_coassembly_k141_397538_28
GWF2_OD1_52_12, Parcubacteria, Bacteria

Not on your lists

comp(30933..31544)
DNA (612bp) protein (204aa)
rnhB; ribonuclease HII; K03470 ribonuclease HII [EC:3.1.26.4] bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease {ECO:0000313|EMBL:KKW24738.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_52_12.;"
S_p1_S3_coassembly_k141_397538_29

Not on your lists

31555..34821
DNA (3267bp) protein (1089aa)
DNA polymerase III subunit alpha (EC:2.7.7.7)
Uncharacterized protein Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXJ6_9BACT
Polymerase III, alpha subunit protein {ECO:0000313|EMBL:KKS89052.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_43_11b.;"
S_p1_S3_coassembly_k141_397538_30
R_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(34816..35349)
DNA (534bp) protein (178aa)
cytochrome c-type biogenesis protein (EC:4.4.1.17)
Uncharacterized protein Tax=uncultured bacterium RepID=K2B0D7_9BACT
Tax=RIFCSPHIGHO2_01_FULL_OD1_47_10b_curated
Displaying 30 items

View Taxonomy