ggKbase home page

S_p1_S3_coassembly_k141_235115

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_235115_1
unknown

Not on your lists

comp(571..1437)
DNA (867bp) protein (289aa)

This feature has no annotations

S_p1_S3_coassembly_k141_235115_2

Not on your lists

1691..2668
DNA (978bp) protein (326aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B4444F
Transcriptional regulator {ECO:0000313|EMBL:KKQ04144.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_36_24.;"
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
S_p1_S3_coassembly_k141_235115_3

Not on your lists

comp(2978..3871)
DNA (894bp) protein (298aa)
filamentation induced by cAMP protein fic bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Filamentation induced by cAMP protein fic {ECO:0000313|EMBL:KHO54137.1}; species="Archaea.;" source="archaeon GW2011_AR18.;"
hypothetical protein
S_p1_S3_coassembly_k141_235115_4
GWA1_OD1_36_12, Parcubacteria, Bacteria

Not on your lists

comp(3950..4513)
DNA (564bp) protein (188aa)
Predicted transcription regulator, containing CBS domains Tax=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=Q5JGL2_PYRKO bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:KKP93362.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_36_12.;"
putative transcription regulator, containing CBS protein
S_p1_S3_coassembly_k141_235115_5
unknown

Not on your lists

4611..5771
DNA (1161bp) protein (387aa)

This feature has no annotations

S_p1_S3_coassembly_k141_235115_6
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

6147..6962
DNA (816bp) protein (272aa)
hypothetical protein
id=5103469 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=RBG_13_Pacearchaeota_36_9_curated
S_p1_S3_coassembly_k141_235115_7
AR19, Pacearchaeaota, DPANN, Archaea

Not on your lists

6934..7275
DNA (342bp) protein (114aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003666E45
hypothetical protein
Tax=AR19
S_p1_S3_coassembly_k141_235115_trna_2
unknown

Not on your lists

comp(7334..7457)
DNA (124bp)
transferRNA Gly
S_p1_S3_coassembly_k141_235115_8

Not on your lists

7562..8383
DNA (822bp) protein (274aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO55598.1}; species="Archaea.;" source="archaeon GW2011_AR21.;"
S_p1_S3_coassembly_k141_235115_9
GWC1_OP11_42_9, Woesebacteria, Microgenomates, Bacteria

Not on your lists

8380..10074
DNA (1695bp) protein (565aa)
Adenylate/guanylate cyclase with Chase sensor {ECO:0000313|EMBL:KKS77764.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWC1_42_9.;"
Adenylate/guanylate cyclase with Chase sensor bin=GWE2_Clostridiales_32_10 species=Bacillus selenitireducens genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWE2_Clostridiales_32_10 organism_group=Clostridiales
putative transmembrane sensor domain protein
S_p1_S3_coassembly_k141_235115_10
unknown

Not on your lists

10080..10193
DNA (114bp) protein (38aa)

This feature has no annotations

S_p1_S3_coassembly_k141_235115_11

Not on your lists

comp(10167..10451)
DNA (285bp) protein (95aa)
Marine sediment metagenome DNA, contig: S06H3_S00960 {ECO:0000313|EMBL:GAI31031.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Uncharacterized protein bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
S_p1_S3_coassembly_k141_235115_12
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(10453..10689)
DNA (237bp) protein (79aa)
DNA-directed RNA polymerase subunit K; K03055 DNA-directed RNA polymerase subunit K [EC:2.7.7.6] bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_235115_13
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(10712..11473)
DNA (762bp) protein (254aa)
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
exosome complex RNA-binding protein Rrp42
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_235115_14
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(11470..12192)
DNA (723bp) protein (241aa)
Rph; exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
exosome complex exonuclease Rrp41
Tax=AR11
S_p1_S3_coassembly_k141_235115_15
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(12189..12917)
DNA (729bp) protein (243aa)
Probable exosome complex RNA-binding protein 1 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
putative exosome complex RNA-binding protein 1
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_235115_16

Not on your lists


comp(12972..13670)
DNA (699bp) protein (233aa)
RNA-associated protein; K14574 ribosome maturation protein SDO1 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ribosome maturation protein SDO1 {ECO:0000313|EMBL:KHO45874.1}; species="Archaea.;" source="archaeon GW2011_AR3.;"
RNA-associated protein
S_p1_S3_coassembly_k141_235115_17

Not on your lists

comp(13672..14418)
DNA (747bp) protein (249aa)
psmA; proteasome subunit alpha (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289};; 20S proteasome alpha subunit {ECO:0000256|HAMAP-Rule:MF_00289}; Proteasome core protein PsmA {ECO:0000256|HAMAP-Rule:MF_00289}; species="Archaea.;" source="archaeon GW2011_AR3.;"
Proteasome subunit alpha
S_p1_S3_coassembly_k141_235115_18
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(14451..14795)
DNA (345bp) protein (115aa)
Ribonuclease P protein component 2 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tax=RBG_13_Woesearchaeota_36_6_curated
S_p1_S3_coassembly_k141_235115_19
unknown

Not on your lists

comp(15183..15923)
DNA (741bp) protein (247aa)

This feature has no annotations

S_p1_S3_coassembly_k141_235115_20
unknown

Not on your lists

16052..17077
DNA (1026bp) protein (342aa)

This feature has no annotations

S_p1_S3_coassembly_k141_235115_21
unknown

Not on your lists

comp(17082..21503)
DNA (4422bp) protein (1474aa)

This feature has no annotations

S_p1_S3_coassembly_k141_235115_22
unknown

Not on your lists

comp(21532..22557)
DNA (1026bp) protein (342aa)

This feature has no annotations

S_p1_S3_coassembly_k141_235115_23
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

22650..24674
DNA (2025bp) protein (675aa)
SMC domain protein Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A5V4_NITMS bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
SMC protein
Tax=RBG_13_Woesearchaeota_36_6_curated
S_p1_S3_coassembly_k141_235115_24
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

24671..26209
DNA (1539bp) protein (513aa)
transmembrane_regions bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_235115_25
unknown

Not on your lists

26400..26699
DNA (300bp) protein (100aa)

This feature has no annotations

S_p1_S3_coassembly_k141_235115_trna_1
unknown

Not on your lists

26851..26975
DNA (125bp)
transferRNA Tyr
Displaying 27 items

View Taxonomy