ggKbase home page

S_p1_S3_coassembly_k141_955237

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_955237_1

Not on your lists


208..1077
DNA (870bp) protein (290aa)
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
LSU ribosomal protein L3e (L3p)
S_p1_S3_coassembly_k141_955237_2

Not on your lists


1067..1873
DNA (807bp) protein (269aa)
50S ribosomal protein L4 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL4_NANEQ bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L4P {ECO:0000313|EMBL:AJS12015.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L4
S_p1_S3_coassembly_k141_955237_3
Methanocaldococcus villosus, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists


1870..2133
DNA (264bp) protein (88aa)
50S ribosomal protein L23P Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VRQ5_9EURY
50S ribosomal protein L23P {ECO:0000313|EMBL:ENN95841.1}; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" source="Methanocaldococcus villosus KIN24-T80.;"
50S ribosomal protein L23
S_p1_S3_coassembly_k141_955237_4

Not on your lists


2135..2875
DNA (741bp) protein (247aa)
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320, ECO:0000256|SAAS:SAAS00010821}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
LSU ribosomal protein l2p; K02886 large subunit ribosomal protein L2 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
50S ribosomal protein L2
S_p1_S3_coassembly_k141_955237_5

Not on your lists


2879..3259
DNA (381bp) protein (127aa)
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S19 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S19
S_p1_S3_coassembly_k141_955237_6

Not on your lists


3263..3724
DNA (462bp) protein (154aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; Flags: Fragment;; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
ribosomal protein L22/L17
S_p1_S3_coassembly_k141_955237_7

Not on your lists


3721..4620
DNA (900bp) protein (300aa)
30S ribosomal protein S3 Tax=uncultured organism RepID=U3GQQ3_9ZZZZ
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S3
S_p1_S3_coassembly_k141_955237_8
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


4617..4814
DNA (198bp) protein (66aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L29
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_955237_9
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4823..5134
DNA (312bp) protein (104aa)
Protein translation factor SUI1 homolog Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BUV5_METCG
protein translation initiation factor SUI1-like protein
Protein translation factor SUI1 homolog {ECO:0000256|HAMAP-Rule:MF_00604, ECO:0000256|PIRNR:PIRNR037511}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC; 103675 / OCM 69 / GP-6) (Methanothrix concilii).;"
S_p1_S3_coassembly_k141_955237_10

Not on your lists


5142..5567
DNA (426bp) protein (142aa)
30S ribosomal protein S17P {ECO:0000256|HAMAP-Rule:MF_01345}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S17P bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S17
S_p1_S3_coassembly_k141_955237_11

Not on your lists


5564..5965
DNA (402bp) protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
50S ribosomal protein L14P
S_p1_S3_coassembly_k141_955237_12

Not on your lists


5965..6336
DNA (372bp) protein (124aa)
50S ribosomal protein L24P {ECO:0000313|EMBL:AJS12534.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
50S ribosomal protein L24P
S_p1_S3_coassembly_k141_955237_13
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

6326..6976
DNA (651bp) protein (217aa)
rps4e; 30S ribosomal protein S4e; K02987 small subunit ribosomal protein S4e bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
ribosomal protein S4E, central domain protein
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_955237_14

Not on your lists


6973..7530
DNA (558bp) protein (186aa)
50S ribosomal protein L5P {ECO:0000313|EMBL:AJS12535.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5
S_p1_S3_coassembly_k141_955237_15
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

7527..7757
DNA (231bp) protein (77aa)
hypothetical protein; K02954 small subunit ribosomal protein S14 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
SSU ribosomal protein S14P
Tax=RBG_13_Woesearchaeota_36_6_curated
S_p1_S3_coassembly_k141_955237_16

Not on your lists


7768..8157
DNA (390bp) protein (130aa)
30S ribosomal protein S8 {ECO:0000313|EMBL:AJS12536.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
30S ribosomal protein S8
S_p1_S3_coassembly_k141_955237_17
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


8161..8712
DNA (552bp) protein (184aa)
50S ribosomal protein L6 Tax=Thermococcus sp. (strain CGMCC 1.5172 / 4557) RepID=G0HIT2_THES4
rpl6p; 50S ribosomal protein L6P
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_955237_18
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8709..9233
DNA (525bp) protein (175aa)
50S ribosomal protein L32e Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8R8_METEZ
50S ribosomal protein L32e
50S ribosomal protein L32e {ECO:0000256|HAMAP-Rule:MF_00810}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalobium.;" source="Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303).;"
S_p1_S3_coassembly_k141_955237_19

Not on your lists

9230..9670
DNA (441bp) protein (147aa)
LSU ribosomal protein l19e; K02885 large subunit ribosomal protein L19e bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; species="Archaea.;" source="archaeon GW2011_AR3.;"
ribosomal protein L19e
S_p1_S3_coassembly_k141_955237_20

Not on your lists


9667..10164
DNA (498bp) protein (166aa)
50S ribosomal protein L18P Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T8Y4_9EURY
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl18p; 50S ribosomal protein L18P
S_p1_S3_coassembly_k141_955237_21
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


10161..11015
DNA (855bp) protein (285aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S5
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_955237_22
Methanocaldococcus fervens, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists


11008..11346
DNA (339bp) protein (113aa)
50S ribosomal protein L30P Tax=Methanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86) RepID=C7P7G2_METFA
rpl30p; 50S ribosomal protein L30
50S ribosomal protein L30P {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00081760}; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" source="Methanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86); (Methanococcus fervens).;"
S_p1_S3_coassembly_k141_955237_23

Not on your lists


11343..11798
DNA (456bp) protein (152aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl15p; 50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
50S ribosomal protein L15P
S_p1_S3_coassembly_k141_955237_24

Not on your lists

11854..13284
DNA (1431bp) protein (477aa)
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Protein translocase subunit SecY {ECO:0000256|RuleBase:RU000537}; species="Archaea.;" source="archaeon GW2011_AR3.;"
Protein translocase subunit SecY
S_p1_S3_coassembly_k141_955237_25

Not on your lists

13289..14014
DNA (726bp) protein (242aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51237.1}; species="Archaea.;" source="archaeon GW2011_AR11.;"
Putative uncharacterized protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
S_p1_S3_coassembly_k141_955237_26
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(14392..14802)
DNA (411bp) protein (137aa)
id=5046299 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tax=CG_Woesearch_01
S_p1_S3_coassembly_k141_955237_27
unknown

Not on your lists

comp(14867..14992)
DNA (126bp) protein (42aa)

This feature has no annotations

S_p1_S3_coassembly_k141_955237_28
unknown

Not on your lists

comp(15025..15465)
DNA (441bp) protein (147aa)

This feature has no annotations

S_p1_S3_coassembly_k141_955237_29

Not on your lists

comp(15552..16394)
DNA (843bp) protein (281aa)
Peptidase M50 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO47179.1}; species="Archaea.;" source="archaeon GW2011_AR4.;"
Zn-dependent protease
S_p1_S3_coassembly_k141_955237_30
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(16425..17147)
DNA (723bp) protein (241aa)
TraB family protein Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VSP1_METIM bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
TraB family protein
Tax=AR11
Displaying items 1-30 of 31 in total

View Taxonomy