ggKbase home page

S_p1_S3_coassembly_k141_1659365

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_1659365_1
unknown

Not on your lists

2..151
DNA (150bp) protein (50aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1659365_2
unknown

Not on your lists

187..756
DNA (570bp) protein (190aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1659365_3
unknown

Not on your lists

719..1915
DNA (1197bp) protein (399aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1659365_4
R_OD1_Nomurabacteria_39_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(1912..2358)
DNA (447bp) protein (149aa)
Transcriptional regulator, AsnC family Tax=nanoarchaeote Nst1 RepID=R1E5Z2_9ARCH
AsnC family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_39_10_curated
S_p1_S3_coassembly_k141_1659365_5
unknown

Not on your lists

2430..2879
DNA (450bp) protein (150aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1659365_6
GWF2_OD1_39_8, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

2929..3183
DNA (255bp) protein (85aa)
cytochrome C4 Tax=Bacteroidales bacterium ph8 RepID=UPI0002E60429
Chorismate mutase {ECO:0000313|EMBL:KKR31005.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Falkowbacteria) bacterium GW2011_GWF2_39_8.;"
prephenate dehydratase
S_p1_S3_coassembly_k141_1659365_7
R_OP11_Roizmanbacteria_36_11, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

3180..4220
DNA (1041bp) protein (347aa)
3-dehydroquinate synthase Tax=Megamonas funiformis YIT 11815 RepID=H3K4E8_9FIRM
3-dehydroquinate synthase
Tax=RIFCSPLOWO2_02_FULL_OP11_Roizmanbacteria_36_11_curated
S_p1_S3_coassembly_k141_1659365_8
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

4217..5005
DNA (789bp) protein (263aa)
Prephenate dehydrogenase Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VQL4_METIM
Prephenate dehydrogenase
Tax=CG_Woesearch_03
S_p1_S3_coassembly_k141_1659365_9
Methanosaeta thermophila, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5002..5793
DNA (792bp) protein (264aa)
prephenate dehydratase (EC:4.2.1.51)
Prephenate dehydratase {ECO:0000313|EMBL:ABK14725.1}; EC=4.2.1.51 {ECO:0000313|EMBL:ABK14725.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta thermophila (strain DSM 6194 / PT) (Methanothrix; thermophila (strain DSM 6194 / PT)).;"
Prephenate dehydratase Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B7Q1_METTP
S_p1_S3_coassembly_k141_1659365_10
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

5825..6883
DNA (1059bp) protein (353aa)
Aspartate aminotransferase bin=GWB1_CP_36_13 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
class I and II aminotransferase
Tax=GWB1_Spirochaetes_36_13_curated
S_p1_S3_coassembly_k141_1659365_11
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(7247..9442)
DNA (2196bp) protein (732aa)
translation elongation factor 2; K03234 elongation factor 2 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Elongation factor 2
Tax=RBG_16_Pacearchaeota_35_8_curated
S_p1_S3_coassembly_k141_1659365_12
R_OD1_Falkowbacteria_39_33, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(9445..9963)
DNA (519bp) protein (173aa)
nucleoside-diphosphate kinase; K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
nucleoside-diphosphate kinase
Tax=RIFCSPLOWO2_01_FULL_OD1_Falkowbacteria_39_33_curated
S_p1_S3_coassembly_k141_1659365_13
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(9920..10114)
DNA (195bp) protein (65aa)
50S ribosomal protein L24e Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=RL24E_ARCFU
Ribosomal protein L24E
50S ribosomal protein L24e {ECO:0000255|HAMAP-Rule:MF_00773}; species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM; 9628 / NBRC 100126).;"
S_p1_S3_coassembly_k141_1659365_14
RIFOXYA2_FULL_Ignavibacteria_37_17_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists


comp(10104..10391)
DNA (288bp) protein (96aa)
30S ribosomal protein S28e bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S28e
Tax=RIFOXYA2_FULL_Ignavibacteria_37_17_curated
S_p1_S3_coassembly_k141_1659365_15
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists


comp(10394..10696)
DNA (303bp) protein (101aa)
50S ribosomal protein L7Ae bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rpl7ae; 50S ribosomal protein L7
Tax=CG_Pacearch_05
S_p1_S3_coassembly_k141_1659365_16

Not on your lists

11445..12827
DNA (1383bp) protein (461aa)
Marine sediment metagenome DNA, contig: S06H3_S07231 {ECO:0000313|EMBL:GAI27269.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative hemolysin bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
S_p1_S3_coassembly_k141_1659365_17
unknown

Not on your lists

12831..13631
DNA (801bp) protein (267aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1659365_18
GWA2_Planctomycetes_40_7_curated, Planctomycetes, Bacteria

Not on your lists

13797..14732
DNA (936bp) protein (312aa)
Hypothetical secreted protein, NosD and DUF11 family bin=GWA2_Planctomycetia_40_7 species=uncultured archaeon genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Planctomycetia_40_7 organism_group=Planctomycetes
Tax=GWA2_Planctomycetes_40_7_curated
S_p1_S3_coassembly_k141_1659365_19
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(14966..15760)
DNA (795bp) protein (265aa)
DNA polymerase beta domain protein region bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA polymerase beta protein
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_1659365_20
unknown

Not on your lists

15866..16324
DNA (459bp) protein (153aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1659365_trna_1
unknown

Not on your lists

comp(16531..16603)
DNA (73bp)
transferRNA Gln
S_p1_S3_coassembly_k141_1659365_21
unknown

Not on your lists

16684..17214
DNA (531bp) protein (177aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1659365_22
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(17436..17795)
DNA (360bp) protein (120aa)
Tax=AR9
S_p1_S3_coassembly_k141_1659365_23
R_OD1_Nomurabacteria_39_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(17838..18290)
DNA (453bp) protein (151aa)
Phosphoesterase PA-phosphatase related protein bin=GWC2_Planctomycete_KSU_39_26 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_39_10_curated
S_p1_S3_coassembly_k141_1659365_24
Thermococcus litoralis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(18372..19208)
DNA (837bp) protein (279aa)
Uncharacterized protein Tax=Thermococcus litoralis DSM 5473 RepID=H3ZL82_THELI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHR79285.1}; species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 /; NS-C).;"
S_p1_S3_coassembly_k141_1659365_25
Petrotoga mobilis, Petrotoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(19205..20998)
DNA (1794bp) protein (598aa)
Predicted nucleoside-diphosphate-sugar pyrophosphorylase Tax=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) RepID=Q2NES5_METST
nucleoside-diphosphate-sugar pyrophosphorylase
Glucose-1-phosphate thymidyltransferase {ECO:0000313|EMBL:ABX32489.1}; species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Petrotoga.;" source="Petrotoga mobilis (strain DSM 10674 / SJ95).;"
Displaying 26 items

View Taxonomy