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S_p1_S3_coassembly_k141_74112

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Displaying items 1-30 of 150 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_74112_1
R_RIF_OD1_12_45_17b, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(3..500)
DNA (498bp) protein (166aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036520EF
gyrB; DNA gyrase subunit B
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_12_45_17b_curated
S_p1_S3_coassembly_k141_74112_2

Not on your lists


comp(575..1720)
DNA (1146bp) protein (382aa)
phenylalanyl-tRNA synthetase, alpha subunit (EC:6.1.1.20)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003827B7C
Uncharacterized protein {ECO:0000313|EMBL:KKT39740.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_44_13.;"
S_p1_S3_coassembly_k141_74112_trna_1
unknown

Not on your lists

1813..1883
DNA (71bp)
transferRNA Met
S_p1_S3_coassembly_k141_74112_trna_2
unknown

Not on your lists

1998..2070
DNA (73bp)
transferRNA Met
S_p1_S3_coassembly_k141_74112_trna_3
unknown

Not on your lists

2096..2170
DNA (75bp)
transferRNA Asp
S_p1_S3_coassembly_k141_74112_3
R_RIF_OD1_07_47_12, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(2187..2696)
DNA (510bp) protein (170aa)
id=3423037 bin=GWA1_ZB2_49_26 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_07_47_12_curated
S_p1_S3_coassembly_k141_74112_4
R_RIF_OD1_07_47_12, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(2693..4111)
DNA (1419bp) protein (473aa)
aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A bin=GWA1_ZB2_49_26 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_07_47_12_curated
S_p1_S3_coassembly_k141_74112_5
R_RIF_OD1_07_45_25, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(4078..4416)
DNA (339bp) protein (113aa)
glutamyl-tRNA(Gln) amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
glutamyl-tRNA amidotransferase subunit C
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_07_45_25_curated
S_p1_S3_coassembly_k141_74112_6
R_RIF_OD1_07_47_12, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(4413..5474)
DNA (1062bp) protein (354aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037AFFFA
rod shape-determining protein MreB
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_07_47_12_curated
S_p1_S3_coassembly_k141_74112_7
R_RIF_OD1_07_48_16, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists


comp(5482..6717)
DNA (1236bp) protein (412aa)
putative prolyl-tRNA synthetase; K01881 prolyl-tRNA synthetase [EC:6.1.1.15] bin=OD1_GWC2_34_28 species=Turicibacter sanguinis genus=Turicibacter taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Prolyl-tRNA synthetase
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_07_48_16_curated
S_p1_S3_coassembly_k141_74112_8
R_RIF_OD1_07_49_22b, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(6719..7801)
DNA (1083bp) protein (361aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000361B477
membrane-associated zinc metalloprotease
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_49_22b_curated
S_p1_S3_coassembly_k141_74112_9
R_RIF_OD1_07_47_12, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(7798..8352)
DNA (555bp) protein (185aa)
Ribosome-recycling factor bin=GWA1_ZB2_49_26 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
ribosome recycling factor
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_07_47_12_curated
S_p1_S3_coassembly_k141_74112_10
R_RIF_OD1_07_48_27b, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(8383..9102)
DNA (720bp) protein (240aa)
dnaX_1; DNA polymerase III subunit tau (EC:2.7.7.7)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003616D88
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_48_27b_curated
S_p1_S3_coassembly_k141_74112_11
R_RIF_OD1_07_47_12, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(9099..10112)
DNA (1014bp) protein (338aa)
Rod shape-determining protein mreB bin=GWA1_ZB2_49_26 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
rod shape-determining protein MreB
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_07_47_12_curated
S_p1_S3_coassembly_k141_74112_12
GWC1_OD1_48_11, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(10125..11405)
DNA (1281bp) protein (427aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase bin=GWA1_ZB2_49_26 species=ACD5 genus=ACD5 taxon_order=ACD5 taxon_class=ACD5 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Uncharacterized protein {ECO:0000313|EMBL:KKU93425.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWC1_48_11.;"
UDP-N-acetylglucosamine1-carboxyvinyltransferase
S_p1_S3_coassembly_k141_74112_13
R_RIF_OD1_07_41_9, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

11435..12562
DNA (1128bp) protein (376aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003798341
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_07_41_9_curated
S_p1_S3_coassembly_k141_74112_14

Not on your lists


comp(12632..13081)
DNA (450bp) protein (150aa)
30S ribosomal protein S9 bin=GWA1_ZB2_49_26 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
30S ribosomal protein S9 {ECO:0000313|EMBL:KKW13521.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_50_10.;"
30S ribosomal protein S9
S_p1_S3_coassembly_k141_74112_15
CG_CPR03_03, CG_CPR03, Bacteria

Not on your lists


comp(13086..13448)
DNA (363bp) protein (121aa)
50S ribosomal protein L13 bin=GWA1_ZB2_49_26 species=Desulfovibrio vulgaris genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
50S ribosomal protein L13
Tax=CG_CPR03_03
S_p1_S3_coassembly_k141_74112_16

Not on your lists


comp(13457..13807)
DNA (351bp) protein (117aa)
50S ribosomal protein L17 {ECO:0000313|EMBL:KKQ98064.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_39_11.;"
50S ribosomal protein L17 bin=GWA1_ZB2_49_26 species=Natranaerobius thermophilus genus=Natranaerobius taxon_order=Natranaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
50S ribosomal protein L17
S_p1_S3_coassembly_k141_74112_17
R_RIF_OD1_07_49_22b, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(13824..14624)
DNA (801bp) protein (267aa)
DNA-directed RNA polymerase subunit alpha bin=GWA1_ZB2_49_26 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
DNA-directed RNA polymerase subunit alpha
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_49_22b_curated
S_p1_S3_coassembly_k141_74112_18
R_RIF_OD1_07_49_22b, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists


comp(14676..15203)
DNA (528bp) protein (176aa)
30S ribosomal protein S4 bin=GWA1_ZB2_49_26 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
30S ribosomal protein S4
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_49_22b_curated
S_p1_S3_coassembly_k141_74112_19
R_RIF_OD1_07_49_22b, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists


comp(15208..15642)
DNA (435bp) protein (145aa)
30S ribosomal protein S11 bin=GWA1_ZB2_49_26 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
30S ribosomal protein S11
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_49_22b_curated
S_p1_S3_coassembly_k141_74112_20
Parcubacteria bacterium GW2011_GWB1_52_7, Parcubacteria, Bacteria

Not on your lists


comp(15645..16034)
DNA (390bp) protein (130aa)
30S ribosomal protein S13 {ECO:0000313|EMBL:KKW28733.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_52_7.;"
30S ribosomal protein S13 bin=GWA1_ZB2_49_26 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
30S ribosomal protein S13
S_p1_S3_coassembly_k141_74112_21
R_RIF_OD1_07_48_16, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(16199..16432)
DNA (234bp) protein (78aa)
Translation initiation factor IF-1 bin=GWA1_ZB2_49_26 species=unknown genus=Lactobacillus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
translation initiation factor IF-1
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_07_48_16_curated
S_p1_S3_coassembly_k141_74112_22
R_RIF_OD1_07_49_22b, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(16494..17762)
DNA (1269bp) protein (423aa)
id=3423165 bin=GWA1_ZB2_49_26 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_49_22b_curated
S_p1_S3_coassembly_k141_74112_23
GWB1_OD1_49_12, Parcubacteria, Bacteria

Not on your lists


comp(17801..19678)
DNA (1878bp) protein (626aa)
Alanine--tRNA ligase bin=GWA1_ZB2_49_26 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Alanine-tRNA ligase
Tax=GWB1_OD1_49_12
S_p1_S3_coassembly_k141_74112_24
R_RIF_OD1_07_49_22b, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(19829..20878)
DNA (1050bp) protein (350aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_49_22b_curated
S_p1_S3_coassembly_k141_74112_25
R_RIF_OD1_07_48_16, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(20961..21968)
DNA (1008bp) protein (336aa)
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.8.1.-)
tRNA-specific 2-thiouridylase MnmA bin=GWA1_ZB2_49_26 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_07_48_16_curated
S_p1_S3_coassembly_k141_74112_26
R_RIF_OD1_07_49_22b, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(22010..22489)
DNA (480bp) protein (160aa)
Putative uncharacterized protein bin=GWA1_ZB2_49_26 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_49_22b_curated
S_p1_S3_coassembly_k141_74112_27
R_RIF_OD1_07_45_25, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(22504..23205)
DNA (702bp) protein (234aa)
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_07_45_25_curated
Displaying items 1-30 of 150 in total

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