ggKbase home page

S_p1_S3_coassembly_k141_293008

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_293008_1
GWA2_Deltaproteobacteria_45_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

446..757
DNA (312bp) protein (104aa)
ferredoxin Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI0002898987
ferredoxin
Tax=GWA2_Deltaproteobacteria_45_12_curated
S_p1_S3_coassembly_k141_293008_2
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

943..1719
DNA (777bp) protein (259aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:ETW93698.1}; EC=4.2.1.17 {ECO:0000313|EMBL:ETW93698.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Enoyl-CoA hydratase Tax=uncultured marine group III euryarchaeote KM3-28-E8 RepID=B3V6K1_9EURY
enoyl-CoA hydratase
S_p1_S3_coassembly_k141_293008_3

Not on your lists

1754..2566
DNA (813bp) protein (271aa)
Enoyl-CoA hydratase/isomerase Tax=Citreicella sp. 357 RepID=I1B0Y0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN87811.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
enoyl-CoA hydratase/isomerase
S_p1_S3_coassembly_k141_293008_4

Not on your lists

2716..3519
DNA (804bp) protein (268aa)
Enoyl-CoA hydratase/isomerase Tax=Citreicella sp. 357 RepID=I1B0Y0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN87811.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Enoyl-CoA hydratase/isomerase
S_p1_S3_coassembly_k141_293008_5
Thermodesulfatator indicus, Thermodesulfatator, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

Not on your lists

4011..4391
DNA (381bp) protein (127aa)
phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00103216};; species="Bacteria; Thermodesulfobacteria; Thermodesulfobacteriales; Thermodesulfobacteriaceae; Thermodesulfatator.;" source="Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812).;"
Phosphoribosyl-AMP cyclohydrolase Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ADJ6_THEID
S_p1_S3_coassembly_k141_293008_6
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4388..5257
DNA (870bp) protein (290aa)
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17)
ATP phosphoribosyltransferase Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000379E9DB
Tax=RBG_13_Deltaproteobacteria_65_10_curated
S_p1_S3_coassembly_k141_293008_7
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists


5526..7328
DNA (1803bp) protein (601aa)
30S ribosomal protein S1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002625753
30S ribosomal protein S1
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
S_p1_S3_coassembly_k141_293008_8
unknown

Not on your lists

comp(7638..8420)
DNA (783bp) protein (261aa)

This feature has no annotations

S_p1_S3_coassembly_k141_293008_9
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

8531..8764
DNA (234bp) protein (78aa)
Exodeoxyribonuclease 7 small subunit bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
exodeoxyribonuclease VII small subunit
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
S_p1_S3_coassembly_k141_293008_10
uncultured delta proteobacterium HF0770_45N15, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8767..9633)
DNA (867bp) protein (289aa)
hypothetical protein Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI0002887070
UDP-glucose pyrophosphorylase {ECO:0000313|EMBL:ADI19627.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; environmental samples.;" source="uncultured delta proteobacterium HF0770_45N15.;"
nucleotidyltransferase
S_p1_S3_coassembly_k141_293008_11
unknown

Not on your lists

comp(9828..10034)
DNA (207bp) protein (69aa)

This feature has no annotations

S_p1_S3_coassembly_k141_293008_12
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

comp(10177..10956)
DNA (780bp) protein (260aa)
hypothetical protein bin=GWC2_NOV_55_46 species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
S_p1_S3_coassembly_k141_293008_13
unknown

Not on your lists

comp(11036..11338)
DNA (303bp) protein (101aa)

This feature has no annotations

S_p1_S3_coassembly_k141_293008_14
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

11593..13278
DNA (1686bp) protein (562aa)
hypothetical protein Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002628AEE
thymidylate synthase complementing protein ThyX
Tax=CG_Woesearch_03
S_p1_S3_coassembly_k141_293008_15
Vibrio maritimus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13291..14523)
DNA (1233bp) protein (411aa)
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:GAL33868.1}; EC=2.7.6.1 {ECO:0000313|EMBL:GAL33868.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio maritimus.;"
ribose-phosphate pyrophosphokinase Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI00026276DB
ribose-phosphate pyrophosphokinase
S_p1_S3_coassembly_k141_293008_16
Thermodesulfatator indicus, Thermodesulfatator, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

Not on your lists

comp(14678..15970)
DNA (1293bp) protein (431aa)
phosphoribosylamine/glycine ligase (EC:4.1.1.21 6.3.4.13)
Phosphoribosylamine/glycine ligase {ECO:0000313|EMBL:AEH45082.1}; EC=4.1.1.21 {ECO:0000313|EMBL:AEH45082.1};; EC=6.3.4.13 {ECO:0000313|EMBL:AEH45082.1};; species="Bacteria; Thermodesulfobacteria; Thermodesulfobacteriales; Thermodesulfobacteriaceae; Thermodesulfatator.;" source="Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812).;"
Phosphoribosylamine--glycine ligase Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8A8J6_THEID
S_p1_S3_coassembly_k141_293008_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16457..17245
DNA (789bp) protein (263aa)
hypothetical protein Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI00037F66AB
hpcH/HpaI aldolase/citrate lyase family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
S_p1_S3_coassembly_k141_293008_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17334..18119
DNA (786bp) protein (262aa)
HpcH/HpaI aldolase Tax=alpha proteobacterium BAL199 RepID=A8TK79_9PROT
hpcH/HpaI aldolase/citrate lyase family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
S_p1_S3_coassembly_k141_293008_19
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(18183..18890)
DNA (708bp) protein (236aa)
hypothetical protein bin=bin1_lowGC species=Myxococcus fulvus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=RBG_16_Chloroflexi_63_12_curated
S_p1_S3_coassembly_k141_293008_20
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(18953..19681)
DNA (729bp) protein (243aa)
hypothetical protein Tax=Arenimonas oryziterrae RepID=UPI0003B6DA78
hypothetical protein
Tax=RBG_16_Chloroflexi_63_12_curated
S_p1_S3_coassembly_k141_293008_21
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19987..20778
DNA (792bp) protein (264aa)
hypothetical protein Tax=alpha proteobacterium SCGC AAA536-G10 RepID=UPI00036E5EA8
HpcH/HpaI aldolase {ECO:0000313|EMBL:EDP67005.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hpcH/HpaI aldolase/citrate lyase family protein
S_p1_S3_coassembly_k141_293008_22
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

21337..21501
DNA (165bp) protein (55aa)
Iron (Metal) dependent repressor Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2II62_ANADE
Iron (metal) dependent repressor
Tax=RBG_16_Nitrospirae_64_22_curated
S_p1_S3_coassembly_k141_293008_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22004..23029
DNA (1026bp) protein (342aa)
HflK protein bin=GWA2_Methylomirabilis_73_35 species=Oxalobacteraceae bacterium IMCC9480 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HflK protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
S_p1_S3_coassembly_k141_293008_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23026..24027
DNA (1002bp) protein (334aa)
HflC protein bin=GWF2_Methylomirabilis_70_14 species=Oxalobacteraceae bacterium IMCC9480 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
membrane protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
S_p1_S3_coassembly_k141_293008_25
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23952..24377)
DNA (426bp) protein (142aa)
ABC transporter peptide-binding protein Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89VQ2_BRADU
ABC transporter peptide-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
S_p1_S3_coassembly_k141_293008_26
unknown

Not on your lists

24604..24837
DNA (234bp) protein (78aa)

This feature has no annotations

S_p1_S3_coassembly_k141_293008_27

Not on your lists

24935..26122
DNA (1188bp) protein (396aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI000363B4E1
CoA-transferase family III {ECO:0000313|EMBL:AIA10953.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
L-carnitine dehydratase/bile acid-inducible protein F
S_p1_S3_coassembly_k141_293008_28
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26172..27560
DNA (1389bp) protein (463aa)
formyl-coenzyme a transferase, caib/baif family (EC:2.8.3.16)
CoA-transferase family III, caib/baif family protein Tax=Oceanibaculum indicum P24 RepID=K2JYI9_9PROT
CoA-transferase family III, caib/baif family protein {ECO:0000313|EMBL:EKE70305.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
S_p1_S3_coassembly_k141_293008_29
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27981..28448
DNA (468bp) protein (156aa)
Uncharacterized protein Tax=Legionella longbeachae RepID=D3HSM9_LEGLN
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_71_12_curated
S_p1_S3_coassembly_k141_293008_30
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(28514..29548)
DNA (1035bp) protein (345aa)
hypothetical protein Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI000362D4AA
luciferase-like protein
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
Displaying items 1-30 of 44 in total

View Taxonomy