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S_p1_S3_coassembly_k141_430911

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_430911_1
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..369)
DNA (369bp) protein (123aa)
Predicted Zn-dependent proteases and their inactivated homologs Tax=uncultured delta proteobacterium HF0200_14D13 RepID=E0XXT5_9DELT
TldD/PmbA family protein {ECO:0000313|EMBL:ETW93412.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
pmbA; pmbA protein
S_p1_S3_coassembly_k141_430911_2
uncultured delta proteobacterium HF0200_14D13, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(369..1748)
DNA (1380bp) protein (460aa)
Predicted Zn-dependent proteases and their inactivated homologs Tax=uncultured delta proteobacterium HF0200_14D13 RepID=E0XXT4_9DELT
Predicted Zn-dependent proteases and their inactivated homologs {ECO:0000313|EMBL:ADI19225.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; environmental samples.;" source="uncultured delta proteobacterium HF0200_14D13.;"
tldD; tldD protein
S_p1_S3_coassembly_k141_430911_3
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

Not on your lists

2632..3618
DNA (987bp) protein (329aa)
hypothetical protein Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI00026267AE
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
S_p1_S3_coassembly_k141_430911_4
unknown

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comp(3796..3972)
DNA (177bp) protein (59aa)

This feature has no annotations

S_p1_S3_coassembly_k141_430911_5
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

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4211..5047
DNA (837bp) protein (279aa)
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I2J6_DESAP
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Candidatus Desulforudis.;" source="Desulforudis audaxviator (strain MP104C).;"
S_p1_S3_coassembly_k141_430911_6
Desulfobulbus propionicus, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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5129..6367
DNA (1239bp) protein (413aa)
Riboflavin biosynthesis protein RibBA Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RDT3_DESPD
GTP cyclohydrolase II
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3).;"
S_p1_S3_coassembly_k141_430911_7
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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6406..6744
DNA (339bp) protein (113aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8TPK5_9PROT
Conserved protein {ECO:0000313|EMBL:GAK45651.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
S_p1_S3_coassembly_k141_430911_8
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6765..7346)
DNA (582bp) protein (194aa)
Ribosomal RNA large subunit methyltransferase E Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6GES9_9DELT
Ribosomal RNA large subunit methyltransferase J {ECO:0000313|EMBL:AKF07120.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
ribosomal RNA methyltransferase RrmJ/FtsJ
S_p1_S3_coassembly_k141_430911_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7728..8774)
DNA (1047bp) protein (349aa)
Thiamine pyrophosphate enzyme-like TPP-binding protein bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
2-oxoglutarate synthase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
S_p1_S3_coassembly_k141_430911_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8774..10573)
DNA (1800bp) protein (600aa)
Putative 2-oxoglutarate ferredoxin oxidoreductase alpha subunit bin=GWD2_Deltaproteobacteria_55_8 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
S_p1_S3_coassembly_k141_430911_11
Saccharibacter sp. AM169, Saccharibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10705..12303
DNA (1599bp) protein (533aa)
DNA internalization-related competence protein ComEC/Rec2 Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI000287DDCD
DNA internalization-related competence protein ComEC/Rec2
DNA internalization-related competence protein ComEC/Rec2 {ECO:0000313|EMBL:CDG34418.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Saccharibacter.;" source="Saccharibacter sp. AM169.;"
S_p1_S3_coassembly_k141_430911_12
S_Thermodesulfobacterium_commune_37_35, Thermodesulfbacterales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

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12519..12743
DNA (225bp) protein (75aa)
hypothetical protein Tax=Thermodesulfobacterium thermophilum RepID=UPI0003B721A7
hypothetical protein
Tax=S_Thermodesulfobacterium_commune_37_35
S_p1_S3_coassembly_k141_430911_13
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12775..13689
DNA (915bp) protein (305aa)
Type 4 prepilin-like proteins leader peptide-processing enzyme {ECO:0000256|RuleBase:RU003794}; EC=2.1.1.- {ECO:0000256|RuleBase:RU003794};; EC=3.4.23.43 {ECO:0000256|RuleBase:RU003794};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
Prepilin peptidase (EC:3.4.23.43)
Type 4 prepilin-like proteins leader peptide-processing enzyme bin=GWC2_Deltaproteobacteria_66_88 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
S_p1_S3_coassembly_k141_430911_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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14003..15010
DNA (1008bp) protein (336aa)
galT; galactose-1-phosphate uridylyltransferase GalT (EC:2.7.7.12) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
galactose-1-phosphate uridylyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
S_p1_S3_coassembly_k141_430911_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(15555..16454)
DNA (900bp) protein (300aa)
Binding-protein-dependent transport systems inner membrane component bin=GWC2_Methylomirabilis_70_24 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
peptide/nickel transport system permease
Tax=GWA2_Rokubacteria_70_23_curated
S_p1_S3_coassembly_k141_430911_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(16466..17383)
DNA (918bp) protein (306aa)
Dipeptide transport system permease DppB bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dppB; dipeptide transport system permease DppB
Tax=GWA2_Rokubacteria_70_23_curated
S_p1_S3_coassembly_k141_430911_17
Oceanithermus profundus, Oceanithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(17446..18972)
DNA (1527bp) protein (509aa)
Extracellular solute-binding protein family 5 Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U4Y2_OCEP5
family 5 extracellular solute-binding protein
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ADR37332.1}; Flags: Precursor;; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Oceanithermus.;" source="Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 /; 506).;"
S_p1_S3_coassembly_k141_430911_18
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

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comp(19011..20057)
DNA (1047bp) protein (349aa)
multidrug resistance protein B; K01273 membrane dipeptidase [EC:3.4.13.19] bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
S_p1_S3_coassembly_k141_430911_19
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

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comp(20125..21183)
DNA (1059bp) protein (353aa)
multidrug resistance protein B; K01273 membrane dipeptidase [EC:3.4.13.19] bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
S_p1_S3_coassembly_k141_430911_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21704..23062)
DNA (1359bp) protein (453aa)
Uncharacterized protein involved in propionate catabolism Tax=Burkholderia sp. Ch1-1 RepID=I2IWY8_9BURK
mmgE/PrpD family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
S_p1_S3_coassembly_k141_430911_21
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23334..23675)
DNA (342bp) protein (114aa)
Uncharacterized protein Tax=Oligotropha carboxidovorans RepID=B6JC60_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07516.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
S_p1_S3_coassembly_k141_430911_22
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(23672..24028)
DNA (357bp) protein (119aa)
hypothetical protein Tax=Leucothrix mucor RepID=UPI0003B48958
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
S_p1_S3_coassembly_k141_430911_23
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

Not on your lists

24799..25776
DNA (978bp) protein (326aa)
hypothetical protein Tax=SAR324 cluster bacterium SCGC AAA240-J09 RepID=UPI0002FB719F
NADH:flavin oxidoreductase
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
S_p1_S3_coassembly_k141_430911_24
R_NC10_66_22, NC10, Bacteria

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comp(25852..26481)
DNA (630bp) protein (210aa)
Hypothetical conserved protein Tax=uncultured Chloroflexi bacterium RepID=H5SHM1_9CHLR
N-acetyltransferase GCN5
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
S_p1_S3_coassembly_k141_430911_25
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26540..27229)
DNA (690bp) protein (230aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
orotate phosphoribosyltransferase Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI000288DE48
orotate phosphoribosyltransferase
S_p1_S3_coassembly_k141_430911_26
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

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27524..28624
DNA (1101bp) protein (367aa)
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
Displaying 26 items

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