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S_p1_S3_coassembly_k141_309012

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_309012_1
CG_Anaero_01, Anaerolineae, Chloroflexi, Bacteria

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3..485
DNA (483bp) protein (161aa)
pheT; phenylalanyl-tRNA synthetase beta chain (EC:6.1.1.20)
phenylalanyl-tRNA synthetase subunit beta Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI00028994ED
Tax=CG_Anaero_01
S_p1_S3_coassembly_k141_309012_2
Anaerococcus hydrogenalis, Anaerococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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604..738
DNA (135bp) protein (45aa)
50S ribosomal protein L34 Tax=Anaerococcus RepID=B6WBH6_9FIRM
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|RuleBase:RU000566}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Anaerococcus.;" source="Anaerococcus hydrogenalis DSM 7454.;"
LSU ribosomal protein L34p
S_p1_S3_coassembly_k141_309012_3
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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766..1125
DNA (360bp) protein (120aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
ribonuclease P Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002628718
ribonuclease P protein component
S_p1_S3_coassembly_k141_309012_4
Brevibacillus panacihumi, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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1139..1414
DNA (276bp) protein (92aa)
Membrane protein insertion efficiency factor Tax=Brevibacillus panacihumi W25 RepID=V6LZN5_9BACL
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus panacihumi W25.;"
hemolytic domain protein
S_p1_S3_coassembly_k141_309012_5
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1404..3101
DNA (1698bp) protein (566aa)
60 kDa inner membrane insertion protein Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI000262871A
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
yidC; preprotein translocase subunit YidC
S_p1_S3_coassembly_k141_309012_6
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

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comp(3117..3377)
DNA (261bp) protein (87aa)
hypothetical protein Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI0002892241
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
S_p1_S3_coassembly_k141_309012_7
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

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3576..4529
DNA (954bp) protein (318aa)
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
hypothetical protein Tax=SAR324 cluster bacterium SCGC AB-629-O05 RepID=UPI000377C2FF
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
S_p1_S3_coassembly_k141_309012_8
Mariniradius saccharolyticus, Mariniradius, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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4690..5286
DNA (597bp) protein (199aa)
Nicotinamidase Tax=Mariniradius saccharolyticus AK6 RepID=M7XA00_9BACT
Nicotinamidase {ECO:0000313|EMBL:EMS31734.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Mariniradius.;" source="Mariniradius saccharolyticus AK6.;"
nicotinamidase-like amidase
S_p1_S3_coassembly_k141_309012_9
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

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5460..7715
DNA (2256bp) protein (752aa)
allosteric NADP-dependent malic enzyme (EC:1.1.1.40)
Allosteric NADP-dependent malic enzyme Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIJ0_CHLTF
Tax=RBG_16_Zixibacteria_50_21_curated
S_p1_S3_coassembly_k141_309012_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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7969..8352
DNA (384bp) protein (128aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
S_p1_S3_coassembly_k141_309012_11
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(8692..9318)
DNA (627bp) protein (209aa)
Nitroreductase Tax=Frankia sp. (strain EAN1pec) RepID=A8L7M8_FRASN
nitroreductase
Nitroreductase {ECO:0000313|EMBL:ABW16593.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
S_p1_S3_coassembly_k141_309012_12
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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9684..10790
DNA (1107bp) protein (369aa)
Putative oxidoreductase protein Tax=Cystobacter fuscus DSM 2262 RepID=S9QCV3_9DELT
Putative oxidoreductase protein {ECO:0000313|EMBL:EPX59149.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
aldo/keto reductase
S_p1_S3_coassembly_k141_309012_13
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10889..11338
DNA (450bp) protein (150aa)
hypothetical protein; K09936 hypothetical protein bin=CNBR_ACIDO species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Uncharacterized protein {ECO:0000313|EMBL:EKE76292.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
S_p1_S3_coassembly_k141_309012_14
GWF2_Planctomycetes_42_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(11536..12933)
DNA (1398bp) protein (466aa)
Methyl-accepting chemotaxis sensory transducer bin=GWF2_Planctomycetes_42_9 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
methyl-accepting chemotaxis sensory transducer with Cache sensor
Tax=GWF2_Planctomycetes_42_9_curated
S_p1_S3_coassembly_k141_309012_15
unknown

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13439..14386
DNA (948bp) protein (316aa)

This feature has no annotations

S_p1_S3_coassembly_k141_309012_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14495..15133)
DNA (639bp) protein (213aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=uncultured marine microorganism HF4000_APKG5H11 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
S_p1_S3_coassembly_k141_309012_17
RLO_Pseudomonas_59_9, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15227..15865)
DNA (639bp) protein (213aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=uncultured marine microorganism HF4000_APKG5H11 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
NIPSNAP family protein
Tax=RifCSPlowO2_12_Pseudomonas_59_9_curated
S_p1_S3_coassembly_k141_309012_18
unknown

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comp(16343..17014)
DNA (672bp) protein (224aa)

This feature has no annotations

S_p1_S3_coassembly_k141_309012_19
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(17198..18211)
DNA (1014bp) protein (338aa)
flagellar motor switch protein FliM Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI000262929F
flagellar motor switch protein
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
S_p1_S3_coassembly_k141_309012_20
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(18715..19515)
DNA (801bp) protein (267aa)
xthA; exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III {ECO:0000313|EMBL:AGY57344.1}; EC=3.1.11.2 {ECO:0000313|EMBL:AGY57344.1};; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
Exodeoxyribonuclease III Tax=Gloeobacter kilaueensis JS1 RepID=U5QIC8_9CYAN
S_p1_S3_coassembly_k141_309012_21
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

Not on your lists

19769..20062
DNA (294bp) protein (98aa)
DNA polymerase beta domain protein region bin=GWC2_Methylomirabilis_70_16 species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
nucleotidyltransferases
Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
S_p1_S3_coassembly_k141_309012_22
unknown

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20059..20199
DNA (141bp) protein (47aa)

This feature has no annotations

S_p1_S3_coassembly_k141_309012_23
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20292..21284)
DNA (993bp) protein (331aa)
HTH-type transcriptional regulator Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DD20_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGV51460.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (vent Ph05).;"
Displaying 23 items

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