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S_p1_S3_coassembly_k141_689586

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_689586_1
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(2..238)
DNA (237bp) protein (79aa)
Riboflavin synthase, alpha subunit Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G4N3_CHLAD
riboflavin synthase subunit alpha
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:ACL25509.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
S_p1_S3_coassembly_k141_689586_2
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(343..1266)
DNA (924bp) protein (308aa)
Uncharacterized protein Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K2S2_DEHLB
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
S_p1_S3_coassembly_k141_689586_3
CG_Anaero_01, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

1498..2841
DNA (1344bp) protein (448aa)
A/G-specific adenine glycosylase Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HBL3_ANADF
A/G-specific adenine glycosylase
Tax=CG_Anaero_01
S_p1_S3_coassembly_k141_689586_4
GWA1_OD1_59_11, Parcubacteria, Bacteria

Not on your lists

2926..4062
DNA (1137bp) protein (379aa)
ddl; D-alanyl-alanine synthetase A (EC:6.3.2.4)
D-alanine--D-alanine ligase Tax=Pseudomonas geniculata RepID=UPI00029B31F0
D-alanine-D-alanine ligase {ECO:0000313|EMBL:KKW48293.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_59_11.;"
S_p1_S3_coassembly_k141_689586_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4283..5878)
DNA (1596bp) protein (532aa)
N-acyl-D-amino-acid deacylase bin=GWC2_Methylomirabilis_70_16 species=Thermotoga thermarum genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
d-aminoacylase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
S_p1_S3_coassembly_k141_689586_6
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5978..6841)
DNA (864bp) protein (288aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
Shikimate dehydrogenase Tax=Geobacter sulfurreducens RepID=AROE_GEOSL
aroE; shikimate 5-dehydrogenase
S_p1_S3_coassembly_k141_689586_7
gamma proteobacterium IMCC2047, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6838..7107)
DNA (270bp) protein (90aa)
hypothetical protein Tax=Marinobacterium rhizophilum RepID=UPI00036DBEE6
Phosphocarrier protein2C nitrogen regulation associated {ECO:0000313|EMBL:EGG99134.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium IMCC2047.;"
ptsH; phosphocarrier protein HPr
S_p1_S3_coassembly_k141_689586_8
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7250..8410)
DNA (1161bp) protein (387aa)
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
S-adenosylmethionine synthase Tax=Geobacter sp. (strain M18) RepID=E8WN18_GEOS8
S_p1_S3_coassembly_k141_689586_9
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8666..10111)
DNA (1446bp) protein (482aa)
Mutant NtrC-like activator Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R2U5_BREDI
tacA; sigma-54-dependent transcriptional regulator (activator) protein
Tax=CG_Delta_03
S_p1_S3_coassembly_k141_689586_10
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10534..11733
DNA (1200bp) protein (400aa)
Peptidase C14 caspase catalytic subunit p20 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8II33_METNO
peptidase C14 caspase catalytic subunit p20
Peptidase C14 caspase catalytic subunit p20 {ECO:0000313|EMBL:ACL57902.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
S_p1_S3_coassembly_k141_689586_11
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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12100..12384
DNA (285bp) protein (95aa)
molecular chaperone GroES Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002625B8F
Co-chaperonin GroES
Tax=RBG_16_Deltaproteobacteria_49_23_curated
S_p1_S3_coassembly_k141_689586_12
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12437..14107
DNA (1671bp) protein (557aa)
molecular chaperone GroEL Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002625F6F
groEL; chaperonin GroEL
Tax=GWB2_Deltaproteobacteria_55_19_curated
S_p1_S3_coassembly_k141_689586_13
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14292..15755
DNA (1464bp) protein (488aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
aspartate kinase (EC:2.7.2.4)
aspartate kinase Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002628713
S_p1_S3_coassembly_k141_689586_14
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15770..16582
DNA (813bp) protein (271aa)
endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
endonuclease III Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E00624
S_p1_S3_coassembly_k141_689586_15
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16724..17350
DNA (627bp) protein (209aa)
Thiamine-phosphate synthase {ECO:0000256|RuleBase:RU003826}; EC=2.5.1.3 {ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|RuleBase:RU003826}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. lig30.;"
thiamine-phosphate pyrophosphorylase (EC:2.5.1.3)
thiamine-phosphate pyrophosphorylase Tax=Pseudomonas pyrrocinia RepID=UPI00030CAB01
S_p1_S3_coassembly_k141_689586_16

Not on your lists

17389..18594
DNA (1206bp) protein (402aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00036DEAEE
Uncharacterized protein {ECO:0000313|EMBL:KKN80006.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
L-carnitine dehydratase/bile acid-inducible protein F
S_p1_S3_coassembly_k141_689586_17
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18666..19631)
DNA (966bp) protein (322aa)
nuclease Tax=Synechococcus sp. CB0101 RepID=UPI0002001B7F
nuclease
Nuclease {ECO:0000313|EMBL:KHK93693.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
S_p1_S3_coassembly_k141_689586_18
Tetrasphaera jenkinsii, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19652..20263)
DNA (612bp) protein (204aa)
hypothetical protein Tax=Nocardioides sp. Iso805N RepID=UPI0003710A7B
FxsA cytoplasmic membrane protein {ECO:0000313|EMBL:CCI53115.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera jenkinsii Ben 74.;"
ytzA; hypothetical protein
S_p1_S3_coassembly_k141_689586_19
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20414..21730
DNA (1317bp) protein (439aa)
Homoserine dehydrogenase bin=GWC2_Nitrospirae_57_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
homoserine dehydrogenase
Tax=CG_Delta_01
S_p1_S3_coassembly_k141_689586_20
RBG_16_Nitrospirae_43_11_curated, Nitrospirae, Bacteria

Not on your lists

22277..22900
DNA (624bp) protein (208aa)
Uncharacterized proteobacterial lipoprotein bin=GWA2_Elusimicrobia_66_18 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
hypothetical protein
Tax=RBG_16_Nitrospirae_43_11_curated
S_p1_S3_coassembly_k141_689586_21
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists

22907..24289
DNA (1383bp) protein (461aa)
Putative uncharacterized protein bin=GWF2_OP3_43_52 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
Tax=GWF2_WOR_2_43_52_curated
S_p1_S3_coassembly_k141_689586_22
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24311..25555
DNA (1245bp) protein (415aa)
3-phosphoserine phosphatase bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
phosphoserine phosphatase
Tax=GWD2_Desulfuromonadales_61_12_curated
S_p1_S3_coassembly_k141_689586_23
Lentisphaera araneosa, Lentisphaera, Lentisphaerales, Lentisphaeria, Lentisphaerae, Bacteria

Not on your lists

25786..27180
DNA (1395bp) protein (465aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; species="Bacteria; Lentisphaerae; Lentisphaeria; Lentisphaerales; Lentisphaeraceae; Lentisphaera.;" source="Lentisphaera araneosa HTCC2155.;"
Dihydrolipoyl dehydrogenase Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTS6_9BACT
lpd; dihydrolipoamide dehydrogenase
S_p1_S3_coassembly_k141_689586_24
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27208..28716
DNA (1509bp) protein (503aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RBG_13_Deltaproteobacteria_52_11_curated
S_p1_S3_coassembly_k141_689586_25
Bdellovibrio bacteriovorus, Bdellovibrio, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28724..29938)
DNA (1215bp) protein (405aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bdellovibrionaceae; Bdellovibrio.;" source="Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529; / HD100).;"
RNA-splicing ligase RtcB Tax=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) RepID=Q6MJC7_BDEBA
cytoplasmic protein
S_p1_S3_coassembly_k141_689586_26
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30267..32882
DNA (2616bp) protein (872aa)
diguanylate cyclase Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002626739
sensor histidine kinase response receiver diguanylate cyclase
Histidine kinase {ECO:0000313|EMBL:AJY69576.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
S_p1_S3_coassembly_k141_689586_27
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(32977..35028)
DNA (2052bp) protein (684aa)
hypothetical protein Tax=Paenibacillus ginsengihumi RepID=UPI000373287A
DNA mismatch repair protein MutL
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
Displaying 27 items

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