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S_p1_S3_coassembly_k141_853212

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Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_853212_1
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..382
DNA (381bp) protein (127aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
7-carboxy-7-deazaguanine synthase Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0ACR1_ALKEH
radical SAM domain-containing protein
S_p1_S3_coassembly_k141_853212_2
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

393..755
DNA (363bp) protein (121aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
6-pyruvoyl tetrahydropterin synthase family Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08RM3_STIAD
6-pyruvoyl tetrahydrobiopterin synthase
S_p1_S3_coassembly_k141_853212_3
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

808..1014
DNA (207bp) protein (69aa)
Putative uncharacterized protein Tax=Oscillatoria sp. PCC 6506 RepID=D8G7B0_9CYAN
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
S_p1_S3_coassembly_k141_853212_4
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1011..1223
DNA (213bp) protein (71aa)
UPI0003D00DC5 related cluster Tax=unknown RepID=UPI0003D00DC5
YcfA-like protein {ECO:0000313|EMBL:KFC65379.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
periplasmic or secreted lipoprotein
S_p1_S3_coassembly_k141_853212_5
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1281..2477
DNA (1197bp) protein (399aa)
Glycolate oxidase subunit Tax=Azospirillum sp. (strain B510) RepID=D3NRV7_AZOS1
glycolate oxidase subunit
Glycolate oxidase subunit {ECO:0000313|EMBL:BAI71136.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
S_p1_S3_coassembly_k141_853212_6
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(2766..3659)
DNA (894bp) protein (298aa)
5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
5,10-methylenetetrahydrofolate reductase Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI000262879A
S_p1_S3_coassembly_k141_853212_7
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

3963..5669
DNA (1707bp) protein (569aa)
N-acetylmuramoyl-L-alanine amidase Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI000288806A
Tax=RBG_13_Acidobacteria_68_16_curated
S_p1_S3_coassembly_k141_853212_8

Not on your lists

5816..7321
DNA (1506bp) protein (502aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase Tax=uncultured candidate division OP1 bacterium RepID=H5SEV4_9BACT
Cysteine-tRNA ligase {ECO:0000313|EMBL:KKW23038.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_51_12.;"
S_p1_S3_coassembly_k141_853212_9
CG_Nitrosp_01, Nitrospirae, Bacteria

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comp(7488..8585)
DNA (1098bp) protein (366aa)
TPR repeat-containing protein bin=GWB2_Nitrospirae_rel_47_37 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
peptidase C14 caspase catalytic subunit p20
Tax=CG_Nitrosp_01
S_p1_S3_coassembly_k141_853212_10
Roseivivax halodurans, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8742..10094)
DNA (1353bp) protein (451aa)
Hydrolase, NUDIX family Tax=marine gamma proteobacterium HTCC2148 RepID=B7S0Q8_9GAMM
NUDIX hydrolase {ECO:0000313|EMBL:ETX13040.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax halodurans JCM 10272.;"
MutT/nudix
S_p1_S3_coassembly_k141_853212_11
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10443..11324
DNA (882bp) protein (294aa)
Thioredoxin domain Tax=uncultured bacterium RepID=C5JAX0_9BACT
thioredoxin-like protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
S_p1_S3_coassembly_k141_853212_12
unknown

Not on your lists

11469..11885
DNA (417bp) protein (139aa)

This feature has no annotations

S_p1_S3_coassembly_k141_853212_13
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11892..13877)
DNA (1986bp) protein (662aa)
Blr0521 protein Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89X06_BRADU
hypothetical protein
Blr0521 protein {ECO:0000313|EMBL:BAC45786.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
S_p1_S3_coassembly_k141_853212_14
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(13901..15370)
DNA (1470bp) protein (490aa)
peptidase C14 caspase catalytic subunit p20 Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI00028A3EDA
hypothetical protein
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
S_p1_S3_coassembly_k141_853212_15
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

16221..16817
DNA (597bp) protein (199aa)
id=1891599 bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Tax=GWC2_Nitrospirae_57_13_curated
S_p1_S3_coassembly_k141_853212_16
CG_Desulfob_01, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16898..17365
DNA (468bp) protein (156aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI0002F2E1DC
Acyl dehydratase
Tax=CG_Desulfob_01
S_p1_S3_coassembly_k141_853212_trna_1
unknown

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17732..17818
DNA (87bp)
transferRNA Ser
S_p1_S3_coassembly_k141_853212_trna_2
unknown

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17837..17925
DNA (89bp)
transferRNA Ser
S_p1_S3_coassembly_k141_853212_17
unknown

Not on your lists

comp(18192..18443)
DNA (252bp) protein (84aa)
hypothetical protein
S_p1_S3_coassembly_k141_853212_18
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18454..19938
DNA (1485bp) protein (495aa)
DNA methyltransferase Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NC45_DESAR
DNA methyltransferase
Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
S_p1_S3_coassembly_k141_853212_19
Desulfobacca acetoxidans, Desulfobacca, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19984..21768
DNA (1785bp) protein (595aa)
DNA methyltransferase Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NC45_DESAR
DNA methyltransferase
DNA methyltransferase {ECO:0000313|EMBL:AEB08840.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfobacca.;" source="Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2).;"
S_p1_S3_coassembly_k141_853212_20
Octadecabacter antarcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21743..21961)
DNA (219bp) protein (73aa)
putative DNA methyltransferase (EC:2.1.1.-)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;" source="Octadecabacter antarcticus 307.;"
Putative DNA methyltransferase Tax=Octadecabacter antarcticus 307 RepID=M9R6Q6_9RHOB
S_p1_S3_coassembly_k141_853212_21
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

21974..22192
DNA (219bp) protein (73aa)
Transposase, IS5 ssgr, IS427 family protein Tax=Blastopirellula marina DSM 3645 RepID=A3ZZ09_9PLAN
Transposase, IS5 ssgr, IS427 family protein {ECO:0000313|EMBL:EAQ78147.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
transposase
S_p1_S3_coassembly_k141_853212_22
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

22334..23440
DNA (1107bp) protein (369aa)
pflA; pyruvate formate-lyase activating enzyme (EC:1.97.1.4)
Pyruvate formate-lyase activating enzyme bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
S_p1_S3_coassembly_k141_853212_23
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

Not on your lists

23585..24733
DNA (1149bp) protein (383aa)
Membrane-bound lytic murein transglycosylase D Tax=Cystobacter fuscus DSM 2262 RepID=S9PJ77_9DELT
lytic transglycosylase, SLT, LysM, LysM, LysM and LysM domain-containing
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
S_p1_S3_coassembly_k141_853212_24
RBG_13_Deltaproteobacteria_58_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24889..26136)
DNA (1248bp) protein (416aa)
hypothetical protein Tax=Fischerella muscicola RepID=UPI0002FACDC5
arabinose efflux permease family protein
Tax=RBG_13_Deltaproteobacteria_58_19_curated
S_p1_S3_coassembly_k141_853212_25
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

26424..28400
DNA (1977bp) protein (659aa)
UvrABC system protein B Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIM4_9BACT
uvrB; UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p1_S3_coassembly_k141_853212_26
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

Not on your lists

comp(28778..29080)
DNA (303bp) protein (101aa)
Uncharacterized protein Tax=Desulfovibrio vulgaris RepID=Q728W3_DESVH
hypothetical protein
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
S_p1_S3_coassembly_k141_853212_27
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

Not on your lists

29167..29967
DNA (801bp) protein (267aa)
DNA repair protein RecO Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002627B2E
DNA repair protein RecO
Tax=RBG_13_Aminicenantes_63_10_curated
S_p1_S3_coassembly_k141_853212_28
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30025..30303
DNA (279bp) protein (93aa)
Plasmid maintenance system killer bin=GWD2_Deltaproteobacteria_55_8 species=Nitrosococcus oceani genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
plasmid maintenance system killer protein
Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
Displaying items 1-30 of 42 in total

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