ggKbase home page

S_p1_S3_coassembly_k141_1310048

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_1310048_1
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_52_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

399..1835
DNA (1437bp) protein (479aa)
atpD; ATP synthase F0F1 subunit beta (EC:3.6.3.14)
F0F1 ATP synthase subunit beta Tax=Methylohalobius crimeensis RepID=UPI0003B316A7
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_52_10_curated
S_p1_S3_coassembly_k141_1310048_2
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1832..2242
DNA (411bp) protein (137aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI00036EA53A
ATP synthase F0F1 subunit epsilon {ECO:0000313|EMBL:AKH39722.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
H+transporting two-sector ATPase delta/subunit epsilon
S_p1_S3_coassembly_k141_1310048_3
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

2239..2508
DNA (270bp) protein (90aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI00037983A6
ATP synthase protein I
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
S_p1_S3_coassembly_k141_1310048_4
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2505..3194
DNA (690bp) protein (230aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI0003636D76
F0F1 ATP synthase subunit A
Tax=RBG_16_Gallionellales_57_15_curated
S_p1_S3_coassembly_k141_1310048_5
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3194..3460
DNA (267bp) protein (89aa)
ATP synthase F0, C subunit Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C5A6_NITHN
ATP synthase F0 subunit C
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242778}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
S_p1_S3_coassembly_k141_1310048_6
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3531..4283
DNA (753bp) protein (251aa)
hypothetical protein Tax=Marinobacterium rhizophilum RepID=UPI000381C078
H+transporting two-sector ATPase B/B' subunit
Tax=RBG_16_Gallionellales_57_15_curated
S_p1_S3_coassembly_k141_1310048_7
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4240..5760
DNA (1521bp) protein (507aa)
atpA-2; ATP synthase F0F1 subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha 2 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=ATPA2_METCA
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
S_p1_S3_coassembly_k141_1310048_8
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5757..6617
DNA (861bp) protein (287aa)
Putative ATP synthase F1, gamma subunit Tax=Sulfuricella denitrificans skB26 RepID=S6ABM0_9PROT
putative ATP synthase F1, gamma subunit
Tax=RBG_16_Gallionellales_57_15_curated
S_p1_S3_coassembly_k141_1310048_9
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(6627..7718)
DNA (1092bp) protein (364aa)
DNA repair photolyase bin=bin3_NC10 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin3_NC10 organism_group=NC10
radical SAM protein
Tax=CSP1_5_NC10
S_p1_S3_coassembly_k141_1310048_10
GWB1_Bdellovibrionales_55_8_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

7984..9420
DNA (1437bp) protein (479aa)
Dihydrolipoyl dehydrogenase bin=GWB1_Deltaproteobacteria_rel_55_8 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
lpdA-1; dihydrolipoamide dehydrogenase
Tax=GWB1_Bdellovibrionales_55_8_curated
S_p1_S3_coassembly_k141_1310048_11
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

Not on your lists

comp(9678..10271)
DNA (594bp) protein (198aa)
PorG_2; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma (EC:1.2.7.3)
Pyruvate:ferredoxin oxidoreductase, gamma subunit Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Q8TXE4_METKA
Pyruvate:ferredoxin oxidoreductase, gamma subunit {ECO:0000313|EMBL:AAM01944.1}; species="Archaea; Euryarchaeota; Methanopyri; Methanopyrales; Methanopyraceae; Methanopyrus.;" source="Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC; 100938).;"
S_p1_S3_coassembly_k141_1310048_12
Methanococcus maripaludis, Methanococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(10470..11063)
DNA (594bp) protein (198aa)
2-oxoglutarate ferredoxin oxidoreductase subunit gamma {ECO:0000313|EMBL:AEK20336.1}; EC=1.2.7.3 {ECO:0000313|EMBL:AEK20336.1};; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus.;" source="Methanococcus maripaludis X1.;"
2-oxoglutarate ferredoxin oxidoreductase subunit gamma Tax=Methanococcus maripaludis RepID=G0H1Y0_METMI
pyruvate ferredoxin/flavodoxin oxidoreductase
S_p1_S3_coassembly_k141_1310048_13
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

comp(11060..11968)
DNA (909bp) protein (303aa)
Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit Tax=Caldanaerobacter subterraneus RepID=Q8RA87_THETN
PorB3; 2-oxoglutarate ferredoxin oxidoreductase subunit beta
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
S_p1_S3_coassembly_k141_1310048_14
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11965..13107)
DNA (1143bp) protein (381aa)
2-oxoglutarate synthase (EC:1.2.7.3)
2-oxoglutarate synthase {ECO:0000313|EMBL:AEG16626.1}; EC=1.2.7.3 {ECO:0000313|EMBL:AEG16626.1};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
2-oxoglutarate synthase Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CMB0_DESK7
S_p1_S3_coassembly_k141_1310048_15
Marinitoga piezophila, Marinitoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(13104..13358)
DNA (255bp) protein (85aa)
4Fe-4S protein Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J5E1_MARPK
4Fe-4S binding protein
4Fe-4S protein {ECO:0000313|EMBL:AEX86085.1}; species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Marinitoga.;" source="Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3).;"
S_p1_S3_coassembly_k141_1310048_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

13575..14462
DNA (888bp) protein (296aa)
LysR substrate-binding protein bin=GWA2_Methylomirabilis_73_35 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LysR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
S_p1_S3_coassembly_k141_1310048_17
bacterium UASB14, Bacteria

Not on your lists

comp(14706..16061)
DNA (1356bp) protein (452aa)
3-deoxy-D-manno-octulosonic-acid transferase Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI0002885783
Three-deoxy-D-manno-octulosonic-acid transferase domain protein {ECO:0000313|EMBL:GAK51771.1}; species="Bacteria.;" source="bacterium UASB14.;"
three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
S_p1_S3_coassembly_k141_1310048_18
bacterium UASB270, Bacteria

Not on your lists

comp(16040..17203)
DNA (1164bp) protein (388aa)
Glycosyl transferase family 9 {ECO:0000313|EMBL:GAK59251.1}; species="Bacteria.;" source="bacterium UASB270.;"
Glycosyl transferase family 9 bin=GWC2_Ignavibacteria_56_12 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
heptosyltransferase
S_p1_S3_coassembly_k141_1310048_19
R_Planctomycetes_50_16, Planctomycetes, Bacteria

Not on your lists

comp(17411..18256)
DNA (846bp) protein (282aa)
UspA domain-containing protein Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U6F9_OCEP5
uspa domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Planctomycetes_50_16_curated
S_p1_S3_coassembly_k141_1310048_20
unknown

Not on your lists

comp(18513..19679)
DNA (1167bp) protein (389aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1310048_21
Geobacter sp. M21, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19843..21612)
DNA (1770bp) protein (590aa)
Aspartate--tRNA(Asp/Asn) ligase {ECO:0000255|HAMAP-Rule:MF_00044}; EC=6.1.1.23 {ECO:0000255|HAMAP-Rule:MF_00044};; Aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=AspRS {ECO:0000255|HAMAP-Rule:MF_00044};; Non-discriminating aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=ND-AspRS {ECO:0000255|HAMAP-Rule:MF_00044};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M21).;"
hypothetical protein Tax=SAR324 cluster bacterium SCGC AAA240-J09 RepID=UPI000370D666
aspS; aspartyl-tRNA synthetase
S_p1_S3_coassembly_k141_1310048_22
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22141..22794
DNA (654bp) protein (218aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI000365AA4F
hypothetical protein
Tax=RBG_16_Gamma2_65_34_curated
S_p1_S3_coassembly_k141_1310048_23
RIFOXYC12_FULL_Lentisphaerae_60_16_curated, Lentisphaerae, Bacteria

Not on your lists

22866..24296
DNA (1431bp) protein (477aa)
polynucleotide adenylyltransferase Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002625F20
polynucleotide adenylyltransferase
Tax=RIFOXYC12_FULL_Lentisphaerae_60_16_curated
S_p1_S3_coassembly_k141_1310048_24
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

24293..25063
DNA (771bp) protein (257aa)
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
S_p1_S3_coassembly_k141_1310048_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

25073..26488
DNA (1416bp) protein (472aa)
PUTATIVE AMIDASE PROTEIN bin=GWA2_Methylomirabilis_73_35 species=Mesorhizobium loti genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidase
Tax=GWA2_Rokubacteria_73_35_curated
S_p1_S3_coassembly_k141_1310048_26
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

26598..28868
DNA (2271bp) protein (757aa)
hypothetical protein Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034BDC4A
recombination factor protein RarA/unknown domain fusion protein
Tax=CG_Anaero_02
S_p1_S3_coassembly_k141_1310048_27
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28962..29381
DNA (420bp) protein (140aa)
hypothetical protein bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RBG_16_Gamma2_65_34_curated
S_p1_S3_coassembly_k141_1310048_28
unknown

Not on your lists

comp(29488..29940)
DNA (453bp) protein (151aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1310048_29
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(30291..31880)
DNA (1590bp) protein (530aa)
ABC transporter peptide-binding protein bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide ABC transporter substrate-binding protein
Tax=GWA2_Rokubacteria_70_23_curated
S_p1_S3_coassembly_k141_1310048_30
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32055..34283)
DNA (2229bp) protein (743aa)
anthranilate synthase (EC:4.1.3.27)
hypothetical protein Tax=SAR324 cluster bacterium SCGC AAA240-J09 RepID=UPI000315BF22
Tax=RBG_13_Deltaproteobacteria_43_22_curated
Displaying items 1-30 of 31 in total

View Taxonomy