ggKbase home page

S_p1_S3_coassembly_k141_1540383

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_1540383_1
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

Not on your lists

1..591
DNA (591bp) protein (197aa)
DNA replication and repair protein RecF Tax=Agrococcus pavilionensis RW1 RepID=U1LP34_9MICO
DNA replication and repair protein RecF
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
S_p1_S3_coassembly_k141_1540383_2
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

612..2996
DNA (2385bp) protein (795aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
DNA gyrase subunit B Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002629280
gyrB; DNA gyrase subunit B
S_p1_S3_coassembly_k141_1540383_3
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3056..4315
DNA (1260bp) protein (420aa)
Uncharacterized protein Tax=Cystobacter fuscus DSM 2262 RepID=S9PCQ7_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EPX62150.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
ATPase
S_p1_S3_coassembly_k141_1540383_4
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4354..4926
DNA (573bp) protein (191aa)
Uncharacterized protein Tax=Cystobacter fuscus DSM 2262 RepID=S9QLL1_9DELT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
S_p1_S3_coassembly_k141_1540383_5
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4953..6017
DNA (1065bp) protein (355aa)
Uracil-DNA glycosylase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UB93_MYXSD
uracil-DNA glycosylase
Uracil-DNA glycosylase {ECO:0000313|EMBL:AGC46171.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
S_p1_S3_coassembly_k141_1540383_6
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6219..7460
DNA (1242bp) protein (414aa)
Putative transmembrane protein Tax=Collimonas fungivorans (strain Ter331) RepID=G0AGM1_COLFT
putative transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:AEK61634.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
S_p1_S3_coassembly_k141_1540383_trna_1
unknown

Not on your lists

comp(7681..7755)
DNA (75bp)
transferRNA Thr
S_p1_S3_coassembly_k141_1540383_7
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

9353..10030
DNA (678bp) protein (226aa)
Flavin reductase domain protein FMN-binding protein Tax=Calothrix sp. PCC 7507 RepID=K9PDB1_9CYAN
nitrilotriacetate monooxygenase component B
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
S_p1_S3_coassembly_k141_1540383_8
CG_Delta_06, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10093..11130)
DNA (1038bp) protein (346aa)
Putative phosphatase, C-terminal domain of histone macro H2A1 like protein Tax=Synechococcus sp. PCC 7502 RepID=K9SRE4_9SYNE
putative phosphatase, C-terminal domain of histone macro H2A1 like protein
Tax=CG_Delta_06
S_p1_S3_coassembly_k141_1540383_9
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(11141..11797)
DNA (657bp) protein (219aa)
Putative uncharacterized protein Tax=Roseiflexus sp. (strain RS-1) RepID=A5UQ25_ROSS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ88728.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
S_p1_S3_coassembly_k141_1540383_10
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(11900..13798)
DNA (1899bp) protein (633aa)
ABC transporter permease Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI000287C13F
ABC transporter ATP-binding protein
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
S_p1_S3_coassembly_k141_1540383_11
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

Not on your lists

comp(13795..15657)
DNA (1863bp) protein (621aa)
ABC transporter Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI00026257CB
ABC transporter
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
S_p1_S3_coassembly_k141_1540383_12
R_OP11_Gottesmanbacteria_49_10, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(15860..16480)
DNA (621bp) protein (207aa)
deoxycytidine triphosphate deaminase; K01494 dCTP deaminase [EC:3.5.4.13] bin=GWC1_OP11_49_16_COMPLETE species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Tax=RIFCSPLOWO2_01_FULL_OP11_Gottesmanbacteria_49_10_curated
S_p1_S3_coassembly_k141_1540383_13
unknown

Not on your lists

comp(16495..16782)
DNA (288bp) protein (96aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1540383_14
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17094..18170
DNA (1077bp) protein (359aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX02364.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
S_p1_S3_coassembly_k141_1540383_15
Candidatus Atelocyanobacterium thalassa, Candidatus Atelocyanobacterium, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

18318..19100
DNA (783bp) protein (261aa)
hypothetical protein Tax=Synechococcus sp. PCC 7336 RepID=UPI000346E13F
glycosyl transferase
Glycosyl transferase {ECO:0000313|EMBL:ADB94908.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Candidatus Atelocyanobacterium.;" source="Atelocyanobacterium thalassa (isolate ALOHA).;"
S_p1_S3_coassembly_k141_1540383_16
Leptonema illini, Leptonema, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

19827..20648
DNA (822bp) protein (274aa)
Uncharacterized protein Tax=Leptonema illini DSM 21528 RepID=H2CAV7_9LEPT
Uncharacterized protein {ECO:0000313|EMBL:EHQ08485.1}; Flags: Precursor;; species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptonema.;" source="Leptonema illini DSM 21528.;"
S_p1_S3_coassembly_k141_1540383_17
BJP_08E140C01_Desulfomicrobium_58_14, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21168..21569
DNA (402bp) protein (134aa)
response regulator receiver modulated chemotaxis protein CheB (EC:3.1.1.61)
Chemotaxis response regulator protein-glutamate methylesterase Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LPE5_DESBD
Tax=BJP_08E140C01_Desulfomicrobium_58_14
S_p1_S3_coassembly_k141_1540383_18
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21836..22795
DNA (960bp) protein (320aa)
cheA; chemotaxis protein CheA (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus laterosporus LMG 15441.;"
chemotaxis protein CheA Tax=Brevibacillus laterosporus RepID=UPI0003743FE1
S_p1_S3_coassembly_k141_1540383_19
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

23077..23565
DNA (489bp) protein (163aa)
Competence/damage-inducible protein cinA bin=GWA2_Elusimicrobia_69_24 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
Tax=GWA2_Elusimicrobia_69_24_curated
S_p1_S3_coassembly_k141_1540383_20
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24010..24642
DNA (633bp) protein (211aa)
Uncharacterized protein Tax=Bordetella bronchiseptica 253 RepID=K4QLH5_BORBO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAE37443.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253).;"
S_p1_S3_coassembly_k141_1540383_21
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24750..25421
DNA (672bp) protein (224aa)
Cysteine dioxygenase type I Tax=Oceanibaculum indicum P24 RepID=K2J3Q7_9PROT
hypothetical protein
Cysteine dioxygenase type I {ECO:0000313|EMBL:EKE77631.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
S_p1_S3_coassembly_k141_1540383_22
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25418..27043
DNA (1626bp) protein (542aa)
Rhodanese domain-containing protein Tax=Oceanibaculum indicum P24 RepID=K2KJX2_9PROT
Rhodanese domain-containing protein {ECO:0000313|EMBL:EKE77630.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
rhodanese domain-containing protein
S_p1_S3_coassembly_k141_1540383_23
Anoxybacillus ayderensis, Anoxybacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27325..28023)
DNA (699bp) protein (233aa)
Strain AB04 contig000005, whole genome shotgun sequence {ECO:0000313|EMBL:KIP21389.1}; EC=2.1.1.34 {ECO:0000313|EMBL:KIP21389.1};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Anoxybacillus.;" source="Anoxybacillus ayderensis.;"
rRNA methylase Tax=Anoxybacillus sp. SK3-4 RepID=T0BEG9_9BACI
rRNA methylase
S_p1_S3_coassembly_k141_1540383_24
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

Not on your lists

comp(28555..29541)
DNA (987bp) protein (329aa)
dihydrouridine synthase Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI0002892DAF
nifR3 family TIM-barrel protein
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
S_p1_S3_coassembly_k141_1540383_25
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

29587..30993
DNA (1407bp) protein (469aa)
Acetoacetate metabolism regulatory protein AtoC, putative Tax=Edwardsiella ictaluri (strain 93-146) RepID=C5BFV1_EDWI9
acetoacetate metabolism regulatory protein AtoC, putative
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
S_p1_S3_coassembly_k141_1540383_26
Oscillatoria acuminata, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

31085..31957
DNA (873bp) protein (291aa)
hypothetical protein Tax=Oscillatoria sp. PCC 10802 RepID=UPI0003806D55
dehydrogenase
Uncharacterized protein {ECO:0000313|EMBL:AFY84255.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria acuminata PCC 6304.;"
S_p1_S3_coassembly_k141_1540383_27
unknown

Not on your lists

32189..32515
DNA (327bp) protein (109aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1540383_28
RIFOXYD12_FULL_Rhodospirillales_60_8_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32705..34096)
DNA (1392bp) protein (464aa)
Ammonia channel (Ammonia transporter) Tax=mine drainage metagenome RepID=E6PUE1_9ZZZZ
ammonia permease
Tax=RIFOXYD12_FULL_Rhodospirillales_60_8_curated
S_p1_S3_coassembly_k141_1540383_29
Pectobacterium wasabiae, Pectobacterium, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34131..34469)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II Tax=Pectobacterium RepID=D0KJY4_PECWW
glnB; nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:ACX87041.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.;" source="Pectobacterium wasabiae (strain WPP163).;"
Displaying items 1-30 of 35 in total

View Taxonomy