ggKbase home page

S_p1_S3_coassembly_k141_2353954

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_2353954_1
unknown

Not on your lists

1..180
DNA (180bp) protein (60aa)
L-seryl-tRNA selenium transferase Tax=Patulibacter americanus RepID=UPI0003B3374E
S_p1_S3_coassembly_k141_2353954_2
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

238..1470
DNA (1233bp) protein (411aa)
MFS family transporter Tax=Pseudomonas stutzeri TS44 RepID=I4JLU1_PSEST
MFS transporter {ECO:0000313|EMBL:KIL04624.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
MFS transporter
S_p1_S3_coassembly_k141_2353954_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1735..2196
DNA (462bp) protein (154aa)
Gst2 protein bin=GWA2_OP3_52_12 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
glutathione S-transferase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
S_p1_S3_coassembly_k141_2353954_4
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(2357..3109)
DNA (753bp) protein (251aa)
Biotin/acetyl-CoA-carboxylase ligase bin=GWC2_Nitrospirae-rel_56_14 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
biotin--[acetyl-CoA-carboxylase] ligase
Tax=GWC2_Nitrospirae_56_14_curated
S_p1_S3_coassembly_k141_2353954_5
unknown

Not on your lists

comp(3140..4318)
DNA (1179bp) protein (393aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI0003608F56
S_p1_S3_coassembly_k141_2353954_6
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

Not on your lists

comp(4315..5250)
DNA (936bp) protein (312aa)
hypothetical protein Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002625F52
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
S_p1_S3_coassembly_k141_2353954_7
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5234..5710)
DNA (477bp) protein (159aa)
hypothetical protein Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002625F51
Tax=CG_Thiomicrospira_01
S_p1_S3_coassembly_k141_2353954_8
unknown

Not on your lists

comp(5670..6161)
DNA (492bp) protein (164aa)

This feature has no annotations

S_p1_S3_coassembly_k141_2353954_9
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

Not on your lists

comp(6208..6657)
DNA (450bp) protein (150aa)
General secretion pathway protein G Tax=Reinekea blandensis MED297 RepID=A4BDX3_9GAMM
general secretion pathway protein G
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
S_p1_S3_coassembly_k141_2353954_10
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

Not on your lists

comp(6661..7884)
DNA (1224bp) protein (408aa)
general secretion pathway protein F Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI000289E40F
general secretion pathway protein F
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
S_p1_S3_coassembly_k141_2353954_11
Desulfatitalea sp. BRH_c12, Desulfatitalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7897..8928)
DNA (1032bp) protein (344aa)
Aminodeoxychorismate lyase Tax=Nitrospina gracilis 3/211 RepID=M1ZE34_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KJS32463.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatitalea.;" source="Desulfatitalea sp. BRH_c12.;"
hypothetical protein
S_p1_S3_coassembly_k141_2353954_12
unknown

Not on your lists

comp(8928..9794)
DNA (867bp) protein (289aa)

This feature has no annotations

S_p1_S3_coassembly_k141_2353954_13
unknown

Not on your lists

comp(9794..10276)
DNA (483bp) protein (161aa)

This feature has no annotations

S_p1_S3_coassembly_k141_2353954_14
unknown

Not on your lists

comp(10278..11765)
DNA (1488bp) protein (496aa)

This feature has no annotations

S_p1_S3_coassembly_k141_2353954_15
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(11978..13897)
DNA (1920bp) protein (640aa)
Cytoplasmic filament protein A bin=GWC1_Spirochaetes_27_15 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes
cytoplasmic filament protein A
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
S_p1_S3_coassembly_k141_2353954_16
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(14312..16930)
DNA (2619bp) protein (873aa)
pyruvate phosphate dikinase Tax=Spirochaeta bajacaliforniensis RepID=UPI0003757355
PEP-utilizing protein
Tax=BJP_IG2069_Spirochaetales_48_31
S_p1_S3_coassembly_k141_2353954_17
RBG_13_Spirochaetes_68_11_curated, Spirochaetes, Bacteria

Not on your lists

comp(16930..17946)
DNA (1017bp) protein (339aa)
Uncharacterized protein Tax=Leptonema illini DSM 21528 RepID=H2CC39_9LEPT
hypothetical protein
Tax=RBG_13_Spirochaetes_68_11_curated
S_p1_S3_coassembly_k141_2353954_18
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(18026..19876)
DNA (1851bp) protein (617aa)
Cytoplasmic filament protein A bin=GWC1_Spirochaetes_27_15 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes
cytoplasmic filament protein A
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
S_p1_S3_coassembly_k141_2353954_19
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(20397..21773)
DNA (1377bp) protein (459aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFV5_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68636.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p1_S3_coassembly_k141_2353954_20
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22062..22772
DNA (711bp) protein (237aa)
hypothetical protein Tax=Thiobacillus denitrificans RepID=UPI00037C9B5D
Membrane protein {ECO:0000313|EMBL:KJV10039.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
hypothetical protein
S_p1_S3_coassembly_k141_2353954_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

22843..23850
DNA (1008bp) protein (336aa)
Alcohol dehydrogenase, zinc-binding protein bin=GWC2_Methylomirabilis_70_16 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
alcohol dehydrogenase
Tax=GWC2_Rokubacteria_70_16_curated
S_p1_S3_coassembly_k141_2353954_22
Thermocrinis albus, Thermocrinis, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

comp(23884..24846)
DNA (963bp) protein (321aa)
thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; species="Bacteria; Aquificae; Aquificales; Aquificaceae; Thermocrinis.;" source="Thermocrinis albus (strain DSM 14484 / JCM 11386 / HI 11/12).;"
Thiamine-monophosphate kinase Tax=Thermocrinis albus (strain DSM 14484 / JCM 11386 / HI 11/12) RepID=D3SL70_THEAH
S_p1_S3_coassembly_k141_2353954_23
Desulfovibrio alaskensis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25491..25775
DNA (285bp) protein (95aa)
Histone family protein DNA-binding protein Tax=Desulfovibrio desulfuricans (strain G20) RepID=Q30XP8_DESDG
histone family protein DNA-binding protein
Histone family protein DNA-binding protein {ECO:0000313|EMBL:ABB39548.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alaskensis (strain G20) (Desulfovibrio desulfuricans; (strain G20)).;"
S_p1_S3_coassembly_k141_2353954_24
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(26018..27706)
DNA (1689bp) protein (563aa)
Kinase, putative Tax=Geobacter metallireducens RepID=Q39WA6_GEOMG
kinase
Tax=RBG_16_Chloroflexi_68_14_curated
S_p1_S3_coassembly_k141_2353954_25
unknown

Not on your lists

28267..28698
DNA (432bp) protein (144aa)

This feature has no annotations

S_p1_S3_coassembly_k141_2353954_26
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28760..29668
DNA (909bp) protein (303aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein Tax=Bradyrhizobium elkanii RepID=UPI0003620501
2-dehydropantoate 2-reductase
S_p1_S3_coassembly_k141_2353954_27
GWC2_Elusimicrobia_65_9_curated, Elusimicrobia, Bacteria

Not on your lists

comp(29709..30668)
DNA (960bp) protein (320aa)
Tyrosine recombinase XerC Tax=Tropheryma whipplei (strain TW08/27) RepID=Q83NN4_TROW8
DNA recombinase
Tax=GWC2_Elusimicrobia_65_9_curated
S_p1_S3_coassembly_k141_2353954_28
GWC2_Deltaproteobacteria_42_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30914..31252
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI00026291F1
nitrogen regulatory protein P-II
Tax=GWC2_Deltaproteobacteria_42_11_curated
S_p1_S3_coassembly_k141_2353954_29
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31371..32780
DNA (1410bp) protein (470aa)
glutamine synthetase Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI00026267BB
glnA; glutamate--ammonia ligase
Tax=GWA2_Deltaproteobacteria_65_63_curated
S_p1_S3_coassembly_k141_2353954_30
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33140..36676
DNA (3537bp) protein (1179aa)
Chromosome partition protein Smc Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A212_PELCD
chromosome segregation ATPase SMC
Tax=GWD2_Desulfuromonadales_61_12_curated
Displaying items 1-30 of 36 in total

View Taxonomy