ggKbase home page

S_p1_S3_coassembly_k141_2363575

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_2363575_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(51..1307)
DNA (1257bp) protein (419aa)
hypothetical protein Tax=Methylosinus sp. LW4 RepID=UPI0003652FCD
transposase for insertion sequence NGRIS-13f
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
S_p1_S3_coassembly_k141_2363575_2
uncultured delta proteobacterium HF0200_14D13, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1763..3115)
DNA (1353bp) protein (451aa)
Membrane-bound lytic murein transglycosylase Tax=uncultured delta proteobacterium HF0200_14D13 RepID=E0XXV0_9DELT
Membrane-bound lytic murein transglycosylase {ECO:0000313|EMBL:ADI19241.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; environmental samples.;" source="uncultured delta proteobacterium HF0200_14D13.;"
transglycosylase
S_p1_S3_coassembly_k141_2363575_3
RLO_PLX_64_10, Bacteria

Not on your lists

3330..4892
DNA (1563bp) protein (521aa)
Integrin-like protein Tax=Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602) RepID=B5GZM9_STRC2
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
S_p1_S3_coassembly_k141_2363575_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4889..6058
DNA (1170bp) protein (390aa)
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130)
hypothetical protein, partial Tax=SAR324 cluster bacterium SCGC AAA240-J09 RepID=UPI0003653F27
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
S_p1_S3_coassembly_k141_2363575_5
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6064..6618
DNA (555bp) protein (185aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
peptide deformylase Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI000289E115
peptide deformylase
S_p1_S3_coassembly_k141_2363575_6
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

6615..7190
DNA (576bp) protein (192aa)
Putative uncharacterized protein Tax=NC10 bacterium 'Dutch sediment' RepID=D5MHK1_9BACT bin=ACD38 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=ACD38 organism_group=OP11 (Microgenomates) organism_desc=OP11
Uncharacterized protein {ECO:0000313|EMBL:KKR16851.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA2_39_33.;"
hypothetical protein
S_p1_S3_coassembly_k141_2363575_7
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7214..7858
DNA (645bp) protein (215aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus str. Maddingley MBC34.;"
Thymidylate kinase Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6HBW5_9DELT
tmk; thymidylate kinase
S_p1_S3_coassembly_k141_2363575_8
bacterium UASB270, Bacteria

Not on your lists

7848..8843
DNA (996bp) protein (332aa)
DNA polymerase III subunit delta'''' Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI000262776F
DNA polymerase III, delta prime subunit {ECO:0000313|EMBL:GAK56808.1}; species="Bacteria.;" source="bacterium UASB270.;"
DNA polymerase III subunit delta'
S_p1_S3_coassembly_k141_2363575_9
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

8840..9370
DNA (531bp) protein (177aa)
hypothetical protein Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002627B5A
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
S_p1_S3_coassembly_k141_2363575_10
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(9621..10721)
DNA (1101bp) protein (367aa)
Putative TIM-barrel fold metal-dependent hydrolase bin=GWA2_Methylomirabilis_73_35 species=Pseudomonas sp. GM67 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidohydrolase family protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
S_p1_S3_coassembly_k141_2363575_11
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10869..11975)
DNA (1107bp) protein (369aa)
Mandelate racemase/muconate lactonizing protein Tax=Ralstonia sp. PBA RepID=I9W3B8_9RALS
mandelate racemase/muconate lactonizing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
S_p1_S3_coassembly_k141_2363575_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12398..13987)
DNA (1590bp) protein (530aa)
ABC transporter peptide-binding protein bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide ABC transporter substrate-binding protein
Tax=GWA2_Rokubacteria_70_23_curated
Displaying 12 items

View Taxonomy