ggKbase home page

S_p1_S3_coassembly_k141_72843

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_72843_1
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(286..468)
DNA (183bp) protein (61aa)
DNA-directed RNA polymerase subunit E RpoE2; K03050 DNA-directed RNA polymerase subunit E" [EC:2.7.7.6] bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA-directed RNA polymerase, subunit E
Tax=AR18
S_p1_S3_coassembly_k141_72843_2

Not on your lists


comp(511..1083)
DNA (573bp) protein (191aa)
DNA-directed RNA polymerase subunit E Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VV26_9EURY bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase subunit E
DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:AJF62934.1}; species="Archaea.;" source="archaeon GW2011_AR20.;"
S_p1_S3_coassembly_k141_72843_3
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(1135..1476)
DNA (342bp) protein (114aa)
Putative uncharacterized protein Tax=sediment metagenome RepID=D9PM40_9ZZZZ bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Tax=AR20
S_p1_S3_coassembly_k141_72843_4
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

1739..3667
DNA (1929bp) protein (643aa)
DNA gyrase subunit B Tax=Thermincola potens (strain JR) RepID=D5X8C5_THEPJ bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA gyrase subunit B
Tax=AR20
S_p1_S3_coassembly_k141_72843_5
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists


3670..6072
DNA (2403bp) protein (801aa)
DNA gyrase subunit A Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3A8P8_CARHZ bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA gyrase subunit A
Tax=AR17
S_p1_S3_coassembly_k141_72843_6
Caldicellulosiruptor saccharolyticus, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

6065..6475
DNA (411bp) protein (137aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000255|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000255|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000255|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000255|HAMAP-Rule:MF_00658}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 /; Tp8T 6331).;"
Ribosomal RNA large subunit methyltransferase H Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=RLMH_CALS8
hypothetical protein
S_p1_S3_coassembly_k141_72843_7
unknown

Not on your lists

6477..6797
DNA (321bp) protein (107aa)

This feature has no annotations

S_p1_S3_coassembly_k141_72843_8
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6957..7595)
DNA (639bp) protein (213aa)
Uncharacterized protein Tax=Alishewanella agri BL06 RepID=I9DQT8_9ALTE
hypothetical protein
Tax=RBG_16_Gamma2_60_9_curated
S_p1_S3_coassembly_k141_72843_9
unknown

Not on your lists

comp(7641..7838)
DNA (198bp) protein (66aa)

This feature has no annotations

S_p1_S3_coassembly_k141_72843_10
unknown

Not on your lists

comp(7831..8550)
DNA (720bp) protein (240aa)

This feature has no annotations

S_p1_S3_coassembly_k141_72843_11
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8547..8993)
DNA (447bp) protein (149aa)
Plastocyanin Tax=Mycobacterium smegmatis JS623 RepID=L0IZA7_MYCSM
Uncharacterized protein {ECO:0000313|EMBL:AKB80859.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 3.;"
plastocyanin
S_p1_S3_coassembly_k141_72843_12
unknown

Not on your lists

comp(9085..9729)
DNA (645bp) protein (215aa)

This feature has no annotations

S_p1_S3_coassembly_k141_72843_13
Methanococcus vannielii, Methanococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists


comp(9782..11011)
DNA (1230bp) protein (410aa)
Translation initiation factor 2 subunit gamma Tax=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) RepID=IF2G_METVS
translation initiation factor IF-2 subunit gamma
Translation initiation factor 2 subunit gamma {ECO:0000255|HAMAP-Rule:MF_00119}; aIF2-gamma {ECO:0000255|HAMAP-Rule:MF_00119}; eIF-2-gamma {ECO:0000255|HAMAP-Rule:MF_00119}; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus.;" source="Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224).;"
S_p1_S3_coassembly_k141_72843_14

Not on your lists

comp(11035..11610)
DNA (576bp) protein (192aa)
Integral membrane protein Tax=Helcococcus kunzii ATCC 51366 RepID=H3NNL6_9FIRM bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Integral membrane protein
Integral membrane protein {ECO:0000313|EMBL:AJF62791.1}; species="Archaea.;" source="archaeon GW2011_AR20.;"
S_p1_S3_coassembly_k141_72843_15
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

Not on your lists

comp(11612..12493)
DNA (882bp) protein (294aa)
hypothetical protein
hypothetical protein bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Tax=GWA2_WOR_2_47_8_curated
S_p1_S3_coassembly_k141_72843_16

Not on your lists

12604..12855
DNA (252bp) protein (84aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003644471
Uncharacterized protein {ECO:0000313|EMBL:KHO50922.1}; species="Archaea.;" source="archaeon GW2011_AR16.;"
hypothetical protein
S_p1_S3_coassembly_k141_72843_17

Not on your lists

12856..13119
DNA (264bp) protein (88aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037D319E
Uncharacterized protein {ECO:0000313|EMBL:KHO50921.1}; species="Archaea.;" source="archaeon GW2011_AR16.;"
hypothetical protein
S_p1_S3_coassembly_k141_72843_18
unknown

Not on your lists

13170..13313
DNA (144bp) protein (48aa)

This feature has no annotations

S_p1_S3_coassembly_k141_72843_19
unknown

Not on your lists

comp(13416..14090)
DNA (675bp) protein (225aa)

This feature has no annotations

S_p1_S3_coassembly_k141_72843_20

Not on your lists

comp(14080..14625)
DNA (546bp) protein (182aa)
Small-conductance mechanosensitive channel Tax=Thermococcus RepID=G0HKF9_THES4 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Small-conductance mechanosensitive channel
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:AJF62835.1}; species="Archaea.;" source="archaeon GW2011_AR20.;"
S_p1_S3_coassembly_k141_72843_21

Not on your lists

14718..16151
DNA (1434bp) protein (478aa)
hypothetical protein
id=5102943 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:AJF62224.1}; species="Archaea.;" source="archaeon GW2011_AR20.;"
S_p1_S3_coassembly_k141_72843_22
unknown

Not on your lists

comp(16148..16600)
DNA (453bp) protein (151aa)

This feature has no annotations

S_p1_S3_coassembly_k141_72843_23
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

16682..17425
DNA (744bp) protein (248aa)
Prolipoprotein diacylglyceryl transferase Tax=Leptospirillum ferrodiazotrophum RepID=C6I0P8_9BACT bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Prolipoprotein diacylglyceryl transferase
Tax=AR20
S_p1_S3_coassembly_k141_72843_24
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(17426..18205)
DNA (780bp) protein (260aa)
Short-chain dehydrogenase/reductase SDR Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BFA7_9ARCH
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AFS83757.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. AR2.;"
S_p1_S3_coassembly_k141_72843_25

Not on your lists


comp(18258..19439)
DNA (1182bp) protein (394aa)
CCA-adding enzyme {ECO:0000256|HAMAP-Rule:MF_01264}; EC=2.7.7.72 {ECO:0000256|HAMAP-Rule:MF_01264};; CCA tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA CCA-pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA adenylyl-/cytidylyl- transferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA-NT {ECO:0000256|HAMAP-Rule:MF_01264}; species="Archaea.;" source="archaeon GW2011_AR17.;"
CCA-adding enzyme Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6WSV3_9EURY
tRNA nucleotidyltransferase CCA-adding enzyme
S_p1_S3_coassembly_k141_72843_26
unknown

Not on your lists

comp(19510..19620)
DNA (111bp) protein (37aa)

This feature has no annotations

Displaying 26 items

View Taxonomy