ggKbase home page

S_p1_S3_coassembly_k141_1066112

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_1066112_trna_1
unknown

Not on your lists

298..414
DNA (117bp)
transferRNA Pseudo
S_p1_S3_coassembly_k141_1066112_trna_2
unknown

Not on your lists

417..520
DNA (104bp)
transferRNA Leu
S_p1_S3_coassembly_k141_1066112_1
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

457..762
DNA (306bp) protein (102aa)
DNA-directed RNA polymerase subunit H {ECO:0000256|HAMAP-Rule:MF_00025}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00025};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus psychrophilus R15.;"
DNA-directed RNA polymerase subunit H Tax=Methanolobus psychrophilus R15 RepID=K4MCR7_9EURY
DNA-directed RNA polymerase, subunit H
S_p1_S3_coassembly_k141_1066112_2
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

764..2257
DNA (1494bp) protein (498aa)
DNA-directed RNA polymerase Tax=Thermococcus RepID=Q5JE32_PYRKO bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase
Tax=AR20
S_p1_S3_coassembly_k141_1066112_3

Not on your lists

2254..4056
DNA (1803bp) protein (601aa)
DNA-directed RNA polymerase subunit B {ECO:0000313|EMBL:KHO52598.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KHO52598.1};; species="Archaea.;" source="archaeon GW2011_AR17.;"
DNA-directed RNA polymerase Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYR9_METFV bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase
S_p1_S3_coassembly_k141_1066112_4
Methanocaldococcus jannaschii, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

4058..8122
DNA (4065bp) protein (1355aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit A'; EC=2.7.7.6;; Contains:; Mja rpoA1 intein; Mja rpol A' intein; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" source="Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 /; JCM 10045 / NBRC 100440) (Methanococcus jannaschii).;"
DNA-directed RNA polymerase subunit A' Tax=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) RepID=RPOA1_METJA
S_p1_S3_coassembly_k141_1066112_5
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

8119..10689
DNA (2571bp) protein (857aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037417CB
DNA-directed RNA polymerase subunit A''
Tax=AR20
S_p1_S3_coassembly_k141_1066112_6

Not on your lists

10682..10930
DNA (249bp) protein (83aa)
50S ribosomal protein L30e Tax=Sulfolobus RepID=RL30E_SULSO bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L30e
Ribosomal protein L30e (RP-L30e, RPL30) {ECO:0000313|EMBL:AIF00801.1}; species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured marine group II/III euryarchaeote KM3_139_C07.;"
S_p1_S3_coassembly_k141_1066112_7
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(10995..11312)
DNA (318bp) protein (106aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037436BF
hypothetical protein
Tax=AR11
S_p1_S3_coassembly_k141_1066112_8

Not on your lists

11377..11646
DNA (270bp) protein (90aa)
hypothetical protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45332.1}; species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
S_p1_S3_coassembly_k141_1066112_9

Not on your lists

11834..12061
DNA (228bp) protein (76aa)
hypothetical protein bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO45153.1}; species="Archaea.;" source="archaeon GW2011_AR4.;"
hypothetical protein
S_p1_S3_coassembly_k141_1066112_10
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

12058..12477
DNA (420bp) protein (140aa)
id=5048107 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Protein containing Nucleotide binding protein, PINc protein
Tax=RBG_16_Euryarchaeota_41_19_curated
S_p1_S3_coassembly_k141_1066112_11

Not on your lists

12572..12778
DNA (207bp) protein (69aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO50108.1}; species="Archaea.;" source="archaeon GW2011_AR9.;"
hypothetical protein
Protein of unknown function DUF2283 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p1_S3_coassembly_k141_1066112_12
unknown

Not on your lists

12921..13418
DNA (498bp) protein (166aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1066112_13

Not on your lists

13469..13870
DNA (402bp) protein (134aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000374B7B8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF63047.1}; species="Archaea.;" source="archaeon GW2011_AR20.;"
S_p1_S3_coassembly_k141_1066112_14
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists


13870..14307
DNA (438bp) protein (146aa)
30S ribosomal protein S12 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=RS12_METKA bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S12
Tax=AR20
S_p1_S3_coassembly_k141_1066112_15
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists


14304..14894
DNA (591bp) protein (197aa)
30S ribosomal protein S7 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RS7_NANEQ bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S7
Tax=AR17
S_p1_S3_coassembly_k141_1066112_16
unknown

Not on your lists

comp(14913..15167)
DNA (255bp) protein (85aa)

This feature has no annotations

Displaying 18 items

View Taxonomy