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S_p2_S4_coassembly_k141_1453611

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Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p2_S4_coassembly_k141_1453611_1
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..162)
DNA (162bp) protein (54aa)
Integrase, catalytic domain-containing protein Tax=Azotobacter vinelandii RepID=C1DPC9_AZOVD
integrase catalytic subunit
Integrase, catalytic domain-containing protein {ECO:0000313|EMBL:AGK19746.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii CA6.;"
S_p2_S4_coassembly_k141_1453611_2
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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597..1589
DNA (993bp) protein (331aa)
Putative Glycosyl transferase, family 2 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIZ5_9BACT
Glycosyl transferase, family 2
Putative Glycosyl transferase, family 2 {ECO:0000313|EMBL:CBE67360.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1453611_3

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1698..3149
DNA (1452bp) protein (484aa)
Polysaccharide biosynthesis protein Tax=Methanobacterium formicicum DSM 3637 RepID=K2R1U2_METFO
Uncharacterized protein {ECO:0000313|EMBL:KKK88567.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
polysaccharide biosynthesis protein
S_p2_S4_coassembly_k141_1453611_4
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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3337..4290
DNA (954bp) protein (318aa)
Methyltransferase type 12 bin=GWC2_OP3_44_8 species=Algoriphagus machipongonensis genus=Algoriphagus taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
Methyltransferase type 12 {ECO:0000313|EMBL:EIJ36648.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
hypothetical protein
S_p2_S4_coassembly_k141_1453611_5
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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4377..5606
DNA (1230bp) protein (410aa)
Glycosyltransferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIZ6_9BACT
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:CBE67361.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1453611_6
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

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5600..7018
DNA (1419bp) protein (473aa)
rfbP; protein RfbP (EC:2.7.8.6)
Putative undecaprenyl-phosphate galactose phosphotransferase bin=GWC2_Deltaproteobacteria_55_46 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
S_p2_S4_coassembly_k141_1453611_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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7255..8217
DNA (963bp) protein (321aa)
galE; UDP-glucose 4-epimerase (UDP-galactose 4-epimerase) (Galactowaldenase) (EC:5.1.3.2)
UDP-glucose 4-epimerase (UDP-galactose 4-epimerase) (Galactowaldenase) {ECO:0000313|EMBL:CBE67363.1}; EC=5.1.3.2 {ECO:0000313|EMBL:CBE67363.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
UDP-glucose 4-epimerase (UDP-galactose 4-epimerase) (Galactowaldenase) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIZ8_9BACT
S_p2_S4_coassembly_k141_1453611_8
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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8408..9343
DNA (936bp) protein (312aa)
PfkB domain protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIZ9_9BACT
PfkB domain-containing protein
PfkB domain protein {ECO:0000313|EMBL:CBE67364.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1453611_9
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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9405..11012
DNA (1608bp) protein (536aa)
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
CTP synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ00_9BACT
S_p2_S4_coassembly_k141_1453611_10
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

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11143..12297
DNA (1155bp) protein (385aa)
hypothetical protein Tax=Verrucomicrobium sp. 3C RepID=UPI000374FBF6
hypothetical protein
Tax=GWF2_Verrucomicrobia_62_7_curated
S_p2_S4_coassembly_k141_1453611_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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12380..13216
DNA (837bp) protein (279aa)
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase; KDO-8-phosphate synthetase, KDOPS) (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
2-dehydro-3-deoxyphosphooctonate aldolase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ01_9BACT
S_p2_S4_coassembly_k141_1453611_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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13305..15131
DNA (1827bp) protein (609aa)
Putative ABC transporter (Permease and ATP-binding protein) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ02_9BACT
ABC transporter (permease and ATP-binding protein)
Putative ABC transporter (Permease and ATP-binding protein) {ECO:0000313|EMBL:CBE67367.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1453611_13
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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15138..15938
DNA (801bp) protein (267aa)
Similar to glucosyl-transferase (Modular protein) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ03_9BACT
glucosyl-transferase
Similar to glucosyl-transferase (Modular protein) {ECO:0000313|EMBL:CBE67368.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1453611_14
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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15920..16771
DNA (852bp) protein (284aa)
Uncharacterized protein Tax=Leptospirillum ferrooxidans (strain C2-3) RepID=I0IPB6_LEPFC
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
S_p2_S4_coassembly_k141_1453611_15
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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16755..17537
DNA (783bp) protein (261aa)
putative lipopolysaccharide core biosynthesis glycosyltransferase (EC:2.4.-.-)
Putative Lipopolysaccharide core biosynthesis glycosyltransferase Tax=Candidatus Nitrospira defluvii RepID=D8PHI5_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
S_p2_S4_coassembly_k141_1453611_16
CSP1_5_NC10, NC10, Bacteria

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17534..18802
DNA (1269bp) protein (423aa)
rfaL; RfaL protein bin=bin3_NC10 species=Halanaerobium saccharolyticum genus=Halanaerobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
S_p2_S4_coassembly_k141_1453611_17
Leptospirillum sp. Group II '5-way CG', Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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18789..19826
DNA (1038bp) protein (346aa)
Transposase Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ANS6_9BACT
Transposase {ECO:0000313|EMBL:EDZ38967.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum sp. Group II '5-way CG'.;"
hypothetical protein
S_p2_S4_coassembly_k141_1453611_18
Acetohalobium arabaticum, Acetohalobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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19823..20899
DNA (1077bp) protein (359aa)
hypothetical protein Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B66BB6
glycosyl transferase family protein
Glycosyl transferase family 9 {ECO:0000313|EMBL:ADL13654.1}; species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halobacteroidaceae; Acetohalobium.;" source="Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288).;"
S_p2_S4_coassembly_k141_1453611_19
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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20928..21989
DNA (1062bp) protein (354aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ04_9BACT
membrane protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67369.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1453611_20
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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21986..22945
DNA (960bp) protein (320aa)
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13)
Arabinose 5-phosphate isomerase {ECO:0000313|EMBL:CBE67370.1}; EC=5.3.1.13 {ECO:0000313|EMBL:CBE67370.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Arabinose 5-phosphate isomerase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ05_9BACT
S_p2_S4_coassembly_k141_1453611_21
unknown

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comp(22915..23652)
DNA (738bp) protein (246aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1453611_22

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24014..25486
DNA (1473bp) protein (491aa)
Marine sediment metagenome DNA, contig: S03H2_S16691 {ECO:0000313|EMBL:GAH63931.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
S_p2_S4_coassembly_k141_1453611_23
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

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comp(25676..26386)
DNA (711bp) protein (237aa)
Glycosyl transferase family 2 Tax=Pedosphaera parvula Ellin514 RepID=B9XN17_9BACT
dolichyl-phosphate beta-D-mannosyltransferase
Tax=RBG_16_Zixibacteria_48_11_curated
S_p2_S4_coassembly_k141_1453611_24
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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26662..27219
DNA (558bp) protein (186aa)
kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC:3.1.3.45)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase {ECO:0000313|EMBL:CBE67372.1}; EC=3.1.3.45 {ECO:0000313|EMBL:CBE67372.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ07_9BACT
S_p2_S4_coassembly_k141_1453611_25
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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27352..28512
DNA (1161bp) protein (387aa)
metK; methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S-adenosylmethionine synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ08_9BACT
S_p2_S4_coassembly_k141_1453611_26
R_NC10_66_22, NC10, Bacteria

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28695..29951
DNA (1257bp) protein (419aa)
adenosylhomocysteinase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] bin=bin3_NC10 species=Meiothermus silvanus genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin3_NC10 organism_group=NC10
ahcY; adenosylhomocysteinase (EC:3.3.1.1)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
S_p2_S4_coassembly_k141_1453611_27
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(30137..31210)
DNA (1074bp) protein (358aa)
Putative Permease YjgP/YjgQ Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ40_9BACT
Permease YjgP/YjgQ
Putative Permease YjgP/YjgQ {ECO:0000313|EMBL:CBE67405.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1453611_28
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(31245..32546)
DNA (1302bp) protein (434aa)
Putative Permease YjgP/YjgQ family protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ41_9BACT
Permease YjgP/YjgQ family protein
Putative Permease YjgP/YjgQ family protein {ECO:0000313|EMBL:CBE67406.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
S_p2_S4_coassembly_k141_1453611_29
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

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32650..33306
DNA (657bp) protein (219aa)
Uncharacterized protein Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDR9_9FIRM
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
S_p2_S4_coassembly_k141_1453611_30
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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33441..35873
DNA (2433bp) protein (811aa)
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI000373C2BC
Metallo-beta-lactamase superfamily
Putative Metallo-beta-lactamase superfamily {ECO:0000313|EMBL:CBE67410.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Displaying items 1-30 of 62 in total

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