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S_p2_S4_coassembly_k141_1024146

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p2_S4_coassembly_k141_1024146_1
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

comp(139..1296)
DNA (1158bp) protein (386aa)
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
Transcriptional regulator; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=CG_Woesearch_03
S_p2_S4_coassembly_k141_1024146_2
CG_Micra_02, Micraarchaeota, Archaea

Not on your lists

1340..2374
DNA (1035bp) protein (345aa)
Tax=CG_Micra_02
S_p2_S4_coassembly_k141_1024146_3
R_OD1_Kaiserbacteria_54_22, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2850..5375)
DNA (2526bp) protein (842aa)
Uncharacterized protein Tax=Blautia sp. CAG:52 RepID=R6G635_9FIRM
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_54_22_curated
S_p2_S4_coassembly_k141_1024146_4

Not on your lists

5608..6054
DNA (447bp) protein (149aa)
NUDIX hydrolase Tax=uncultured bacterium RepID=K1Z279_9BACT
NUDIX hydrolase {ECO:0000313|EMBL:EKD43577.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
NUDIX hydrolase
S_p2_S4_coassembly_k141_1024146_5
unknown

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comp(6043..6381)
DNA (339bp) protein (113aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1024146_6

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6583..7851
DNA (1269bp) protein (423aa)
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00017576}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00017588};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; species="Archaea.;" source="archaeon GW2011_AR4.;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
S_p2_S4_coassembly_k141_1024146_7
AR11, Woesearchaeaota, DPANN, Archaea

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8038..9096
DNA (1059bp) protein (353aa)
alanyl tRNA synthetase suspected. See adjacent gene [S_p2_S4_coassembly_k141_1024146_6].
Tax=AR11
alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7] bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
alanyl-tRNA synthetase (EC:6.1.1.7)
S_p2_S4_coassembly_k141_1024146_8
Photobacterium leiognathi, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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9153..9620
DNA (468bp) protein (156aa)
YbaK / prolyl-tRNA synthetases associated domain protein Tax=Photobacterium leiognathi subsp. mandapamensis svers.1.1. RepID=F2PAZ1_PHOMO
YbaK / prolyl-tRNA synthetases associated domain protein {ECO:0000313|EMBL:GAA05077.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" source="Photobacterium leiognathi subsp. mandapamensis svers.1.1.;"
hypothetical protein
S_p2_S4_coassembly_k141_1024146_9
unknown

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comp(9950..10462)
DNA (513bp) protein (171aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1024146_10
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(10729..11163)
DNA (435bp) protein (145aa)
Putative uncharacterized protein bin=GWF2_Melioribacter_38_21 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
hypothetical protein
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
S_p2_S4_coassembly_k141_1024146_11
CG_Pacearch_04, Pacearchaeota, Archaea

Not on your lists


comp(11375..14062)
DNA (2688bp) protein (896aa)
Valine--tRNA ligase bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Valine-tRNA ligase
Tax=CG_Pacearch_04
S_p2_S4_coassembly_k141_1024146_12
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

14340..15572
DNA (1233bp) protein (411aa)
replication factor C large subunit; K04800 replication factor C large subunit bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
replication factor C large subunit
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_1024146_13
unknown

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15722..16051
DNA (330bp) protein (110aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1024146_14
unknown

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comp(16287..16763)
DNA (477bp) protein (159aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1024146_15
unknown

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comp(16862..17893)
DNA (1032bp) protein (344aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1024146_16
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

Not on your lists

comp(17906..19027)
DNA (1122bp) protein (374aa)
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase Tax=Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B) RepID=E4S991_CALKI
Tax=RBG_13_WOR_2_41_10_curated
S_p2_S4_coassembly_k141_1024146_17
unknown

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19381..20523
DNA (1143bp) protein (381aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1024146_18
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

20695..21354
DNA (660bp) protein (220aa)
hypothetical protein bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Tax=AR4
S_p2_S4_coassembly_k141_1024146_19

Not on your lists


21461..23008
DNA (1548bp) protein (516aa)
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycyl-tRNA synthetase bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Glycyl-tRNA synthetase {ECO:0000313|EMBL:AJF61228.1}; species="Archaea.;" source="archaeon GW2011_AR15.;"
S_p2_S4_coassembly_k141_1024146_20
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(23270..27049)
DNA (3780bp) protein (1260aa)
hypothetical protein bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
S_p2_S4_coassembly_k141_1024146_21
unknown

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comp(27087..29588)
DNA (2502bp) protein (834aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1024146_22
unknown

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comp(29690..29884)
DNA (195bp) protein (65aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1024146_23
GWA1_OP11_39_11, Levybacteria, Microgenomates, Bacteria

Not on your lists

30214..31098
DNA (885bp) protein (295aa)
Integral membrane protein DUF6 {ECO:0000313|EMBL:KKQ95582.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Levybacteria) bacterium GW2011_GWA1_39_11.;"
Putative uncharacterized protein bin=GWF2_Melioribacter_38_21 species=Methanosarcina barkeri genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
hypothetical protein
S_p2_S4_coassembly_k141_1024146_24
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31445..32746
DNA (1302bp) protein (434aa)
purA; adenylosuccinate synthase (EC:6.3.4.4)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
UPI0003D5A832 related cluster Tax=unknown RepID=UPI0003D5A832
Displaying 24 items

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