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S_p2_S4_coassembly_k141_1797318

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Displaying items 1-30 of 154 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p2_S4_coassembly_k141_1797318_1
AR10, Diapherotrites, DPANN, Archaea

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comp(212..754)
DNA (543bp) protein (181aa)
transcription initiation factor TFIIE subunit alpha
transcription factor TFIIE subunit alpha; K03136 transcription initiation factor TFIIE subunit alpha bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p2_S4_coassembly_k141_1797318_2
AR10, Diapherotrites, DPANN, Archaea

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comp(805..1335)
DNA (531bp) protein (177aa)
hypothetical protein; K07254 tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206] bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
hypothetical protein
Tax=AR10
S_p2_S4_coassembly_k141_1797318_3
Methanofollis liminatans, Methanofollis, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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1401..2678
DNA (1278bp) protein (426aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanofollis.;" source="Methanofollis liminatans DSM 4140.;"
serS; seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase Tax=Methanofollis liminatans DSM 4140 RepID=J1L234_9EURY
S_p2_S4_coassembly_k141_1797318_4

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2689..3378
DNA (690bp) protein (230aa)
type 11 methyltransferase bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Type 11 methyltransferase {ECO:0000313|EMBL:KHO45196.1}; species="Archaea.;" source="archaeon GW2011_AR3.;"
6-O-methylguanine-DNA methyltransferase
S_p2_S4_coassembly_k141_1797318_5
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(3381..3743)
DNA (363bp) protein (121aa)
Rhodanese domain protein Tax=Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21) RepID=D3PKC1_MEIRD
Strain A contig00004, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ55749.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber.;"
rhodanese domain-containing protein
S_p2_S4_coassembly_k141_1797318_trna_1
unknown

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3816..3889
DNA (74bp)
transferRNA Lys
S_p2_S4_coassembly_k141_1797318_6
Spirochaeta thermophila, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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4044..6371
DNA (2328bp) protein (776aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta thermophila (strain ATCC 49972 / DSM 6192 / RI 19.B1).;"
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000365A573
hypothetical protein
S_p2_S4_coassembly_k141_1797318_7
R_Berkelbacteria_36_9, Berkelbacteria, Bacteria

Not on your lists

6405..6932
DNA (528bp) protein (176aa)
L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D (EC:3.5.1.1)
Asparaginase Tax=uncultured bacterium RepID=K2B461_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Berkelbacteria_36_9_curated
S_p2_S4_coassembly_k141_1797318_8
RIFOXYB2_FULL_Peregrinibacteria_32_7_curated, Peregrinibacteria, Bacteria

Not on your lists

7138..7788
DNA (651bp) protein (217aa)
Tax=RIFOXYB2_FULL_Peregrinibacteria_32_7_curated
S_p2_S4_coassembly_k141_1797318_trna_2
unknown

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7826..7966
DNA (141bp)
transferRNA Undet
S_p2_S4_coassembly_k141_1797318_9
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

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8014..8769
DNA (756bp) protein (252aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI00037EB6CE
hypothetical protein
Tax=RIFOXYC12_FULL_TA06_54_24_curated
S_p2_S4_coassembly_k141_1797318_10
RHI_RIF_OD1_06_38_11, RIF-OD1-6, Parcubacteria, Bacteria

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comp(8779..10068)
DNA (1290bp) protein (430aa)
Ammonium transporter Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TCH6_9CHLR
ammonium transporter
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_06_38_11_curated
S_p2_S4_coassembly_k141_1797318_11
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(10096..11430)
DNA (1335bp) protein (445aa)
glutamine synthetase (EC:6.3.1.2)
glutamine synthetase, type I (EC:6.3.1.2); K01915 glutamine synthetase [EC:6.3.1.2] bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p2_S4_coassembly_k141_1797318_12

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11613..12056
DNA (444bp) protein (148aa)
AsnC family transcriptional regulator
AsnC family transcriptional regulator bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
AsnC family transcriptional regulator {ECO:0000313|EMBL:AJF60572.1}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p2_S4_coassembly_k141_1797318_13

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12416..14587
DNA (2172bp) protein (724aa)
hypothetical protein
fibronectin type III domain-containing protein bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Fibronectin type III protein {ECO:0000313|EMBL:AJF60122.1}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p2_S4_coassembly_k141_1797318_14
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

14600..15655
DNA (1056bp) protein (352aa)
geranylgeranyl diphosphate synthase, type I (EC:2.5.1.1)
polyprenyl synthetase; K13787 geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p2_S4_coassembly_k141_1797318_15
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(15782..16522)
DNA (741bp) protein (247aa)
hypothetical protein
hypothetical protein bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p2_S4_coassembly_k141_1797318_16
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

16638..17864
DNA (1227bp) protein (409aa)
hypothetical protein
Uncharacterized protein bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p2_S4_coassembly_k141_1797318_17

Not on your lists

17922..19058
DNA (1137bp) protein (379aa)
hypothetical protein
hypothetical protein; K02004 putative ABC transport system permease protein bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Uncharacterized protein {ECO:0000313|EMBL:AJF60583.1}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p2_S4_coassembly_k141_1797318_18
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

19099..19812
DNA (714bp) protein (238aa)
hypothetical protein
ABC-type transporters, involved in lipoprotein release, ATPase component; K02003 putative ABC transport system ATP-binding protein bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p2_S4_coassembly_k141_1797318_19

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19813..20943
DNA (1131bp) protein (377aa)
hypothetical protein
hypothetical protein; K02004 putative ABC transport system permease protein bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Uncharacterized protein {ECO:0000313|EMBL:AJF60585.1}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p2_S4_coassembly_k141_1797318_20
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(20997..22865)
DNA (1869bp) protein (623aa)
GTP pyrophosphokinase (EC:2.7.6.5)
GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp synthetase I) ((P)ppGpp synthetase) (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5] bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p2_S4_coassembly_k141_1797318_21

Not on your lists

22996..23688
DNA (693bp) protein (231aa)
triosephosphate isomerase TIM (EC:5.3.1.1)
triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p2_S4_coassembly_k141_1797318_22
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(23709..24119)
DNA (411bp) protein (137aa)
nitrogen fixation protein NifU-related protein
NifU family SUF system FeS assembly protein; K04488 nitrogen fixation protein NifU and related proteins bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p2_S4_coassembly_k141_1797318_23
R_Elusimicrobia_64_13, Elusimicrobia, Bacteria

Not on your lists

comp(24120..25337)
DNA (1218bp) protein (406aa)
sufS; cysteine desulfurase SufS (EC:2.8.1.7); K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
cysteine desulfurase
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_64_13_curated
S_p2_S4_coassembly_k141_1797318_24

Not on your lists

comp(25344..26471)
DNA (1128bp) protein (376aa)
Fe-S cluster assembly protein SufD
Fe-S cluster assembly protein; K09015 Fe-S cluster assembly protein SufD bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Fe-S cluster assembly protein SufD {ECO:0000313|EMBL:AJF60311.1}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p2_S4_coassembly_k141_1797318_25
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(26476..27900)
DNA (1425bp) protein (475aa)
Fe-S cluster assembly protein SufB
Iron-regulated ABC transporter membrane component SufB; K09014 Fe-S cluster assembly protein SufB bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p2_S4_coassembly_k141_1797318_26
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(27901..28668)
DNA (768bp) protein (256aa)
Fe-S cluster assembly ATP-binding protein
FeS assembly ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p2_S4_coassembly_k141_1797318_27

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comp(28724..29053)
DNA (330bp) protein (110aa)
Uncharacterized protein Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46F28_METBF
Uncharacterized protein {ECO:0000313|EMBL:KKN44753.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
S_p2_S4_coassembly_k141_1797318_28
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

29180..29842
DNA (663bp) protein (221aa)
hypothetical protein
nhaA2; putative lipoprotein bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
Displaying items 1-30 of 154 in total

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