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S_p2_S4_coassembly_k141_1305795

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p2_S4_coassembly_k141_1305795_1
CG_Woesearch_02, Woesearchaeota, Archaea

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221..2152
DNA (1932bp) protein (644aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=SYT_THETN
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_1305795_2
Xenorhabdus nematophila, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2149..2673)
DNA (525bp) protein (175aa)
def; peptide deformylase (EC:3.5.1.31)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus nematophila str. Websteri.;"
Peptide deformylase Tax=Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6) RepID=D3V8R0_XENNA
S_p2_S4_coassembly_k141_1305795_3
CG_CPR13_01, CG_CPR13, Bacteria

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comp(2844..3731)
DNA (888bp) protein (296aa)
hypothetical protein bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
hypothetical protein
Tax=CG_CPR13_01
S_p2_S4_coassembly_k141_1305795_4
R_OD1_Giovannonibacteria_46_13, Giovannonibacteria, Parcubacteria, Bacteria

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comp(3728..4117)
DNA (390bp) protein (130aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_46_13_curated
S_p2_S4_coassembly_k141_1305795_5
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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4258..4467
DNA (210bp) protein (70aa)
Tax=RBG_13_Pacearchaeota_36_9_curated
S_p2_S4_coassembly_k141_1305795_6
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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4464..4856
DNA (393bp) protein (131aa)
PilT protein domain protein
Tax=RBG_13_Pacearchaeota_36_9_curated
S_p2_S4_coassembly_k141_1305795_7
CG_Woesearch_02, Woesearchaeota, Archaea

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4900..6249
DNA (1350bp) protein (450aa)
signal recognition particle protein Srp54; K03106 signal recognition particle subunit SRP54 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
SRP54-type protein, GTPase protein
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_1305795_8
unknown

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comp(6256..6921)
DNA (666bp) protein (222aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1305795_9
CG_Woesearch_02, Woesearchaeota, Archaea

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6995..8266
DNA (1272bp) protein (424aa)
PHP domain protein bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
PHP protein
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_1305795_10
unknown

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8366..8575
DNA (210bp) protein (70aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1305795_11
AR11, Woesearchaeaota, DPANN, Archaea

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comp(8929..10365)
DNA (1437bp) protein (479aa)
transmembrane_regions bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR11
S_p2_S4_coassembly_k141_1305795_12
CG_Woesearch_03, Woesearchaeota, Archaea

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10480..11043
DNA (564bp) protein (188aa)
Tax=CG_Woesearch_03
S_p2_S4_coassembly_k141_1305795_13

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11050..11574
DNA (525bp) protein (175aa)
Marine sediment metagenome DNA, contig: S01H1_S08790 {ECO:0000313|EMBL:GAG12683.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
id=5041691 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
S_p2_S4_coassembly_k141_1305795_14
AR4, Woesearchaeaota, DPANN, Archaea

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11580..12092
DNA (513bp) protein (171aa)
id=5041691 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
S_p2_S4_coassembly_k141_1305795_15
unknown

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comp(12874..13542)
DNA (669bp) protein (223aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1305795_16
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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13621..14100
DNA (480bp) protein (160aa)
CBS domain pair protein Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D333_9ARCH
CBS domain pair protein
CBS domain pair protein {ECO:0000313|EMBL:AJW71165.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. NF5.;"
S_p2_S4_coassembly_k141_1305795_17
AR20, Woesearchaeaota, DPANN, Archaea

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14103..14570
DNA (468bp) protein (156aa)
Uncharacterized protein MJ0653 Tax=Methanocaldococcus RepID=Y653_METJA bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Tax=AR20
S_p2_S4_coassembly_k141_1305795_trna_1
unknown

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14617..14739
DNA (123bp)
transferRNA Val
S_p2_S4_coassembly_k141_1305795_18
AR4, Woesearchaeaota, DPANN, Archaea

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14807..15976
DNA (1170bp) protein (390aa)
hypothetical protein bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Tax=AR4
S_p2_S4_coassembly_k141_1305795_19
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

16035..17516
DNA (1482bp) protein (494aa)
AMP phosphohydrolase; K00758 thymidine phosphorylase [EC:2.4.2.4] bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
thymidine phosphorylase
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_1305795_20

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comp(17542..18387)
DNA (846bp) protein (282aa)
HflC protein Tax=uncultured bacterium RepID=K2GA21_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKL21364.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
S_p2_S4_coassembly_k141_1305795_21

Not on your lists

comp(18424..19431)
DNA (1008bp) protein (336aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO49179.1}; species="Archaea.;" source="archaeon GW2011_AR9.;"
Putative uncharacterized protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
S_p2_S4_coassembly_k141_1305795_22

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19612..19755
DNA (144bp) protein (48aa)
elongation factor 1-alpha (EC:2.7.7.4); K03231 elongation factor 1-alpha bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Elongation factor 1-alpha {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004060}; Short=EF-1-alpha {ECO:0000256|HAMAP-Rule:MF_00118};; Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118}; species="Archaea.;" source="archaeon GW2011_AR11.;"
Elongation factor 1-alpha
Displaying 23 items

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