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S_p2_S4_coassembly_k141_3645155

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p2_S4_coassembly_k141_3645155_1
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1..141
DNA (141bp) protein (47aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00559, ECO:0000256|RuleBase:RU003388}; Short=GAPDH {ECO:0000256|HAMAP-Rule:MF_00559};; EC=1.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00559, ECO:0000256|RuleBase:RU003388};; NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00559}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina siciliae T4/M.;"
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase Tax=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) RepID=G3P_METS5
S_p2_S4_coassembly_k141_3645155_2
AR11, Woesearchaeaota, DPANN, Archaea

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comp(134..1414)
DNA (1281bp) protein (427aa)
MiaB-like tRNA modifying enzyme bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
MiaB-like tRNA modifying enzyme
Tax=AR11
S_p2_S4_coassembly_k141_3645155_3
unknown

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comp(1447..1878)
DNA (432bp) protein (144aa)

This feature has no annotations

S_p2_S4_coassembly_k141_3645155_4

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comp(2061..3371)
DNA (1311bp) protein (437aa)
pgm; phosphoglucomutase (pgm) (EC:5.4.2.2); K15778 phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Phosphoglucomutase (Pgm), phosphomannomutase / phosphoglucomutase {ECO:0000313|EMBL:KHO45341.1}; EC=5.4.2.2 {ECO:0000313|EMBL:KHO45341.1};; EC=5.4.2.8 {ECO:0000313|EMBL:KHO45341.1};; species="Archaea.;" source="archaeon GW2011_AR3.;"
Phosphoglucomutase
S_p2_S4_coassembly_k141_3645155_5
CG_Woesearch_02, Woesearchaeota, Archaea

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3486..3773
DNA (288bp) protein (96aa)
id=5048677 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_3645155_6

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comp(3770..4180)
DNA (411bp) protein (137aa)
transmembrane_regions 13..35 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:EKE10981.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
S_p2_S4_coassembly_k141_3645155_7
AR11, Woesearchaeaota, DPANN, Archaea

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comp(4189..4434)
DNA (246bp) protein (82aa)
Tax=AR11
S_p2_S4_coassembly_k141_3645155_8
unknown

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4593..5018
DNA (426bp) protein (142aa)

This feature has no annotations

S_p2_S4_coassembly_k141_3645155_9
unknown

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5068..5514
DNA (447bp) protein (149aa)

This feature has no annotations

S_p2_S4_coassembly_k141_3645155_10
CG_Kuenen_01, Kuenenbacteria, Parcubacteria, Bacteria

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comp(5891..6298)
DNA (408bp) protein (136aa)
Histidine triad (HIT) protein Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7TBY8_9DELT
Histidine triad (HIT) protein
Tax=CG_Kuenen_01
S_p2_S4_coassembly_k141_3645155_11
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(6609..6860)
DNA (252bp) protein (84aa)
Transcription factor CBF/NF-Y/histone domain-containing protein bin=GWA2_Bacteroidetes_42_15 species=nanoarchaeote Nst1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Nanoarchaeota tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
hypothetical protein
Tax=CG_Woesearch_02
S_p2_S4_coassembly_k141_3645155_12
Methanoculleus sp. CAG:1088, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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6910..8592
DNA (1683bp) protein (561aa)
Glutamyl-tRNA synthetase / Glutamyl-tRNA(Gln) synthetase (EC:6.1.1.17 6.1.1.24)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000256|SAAS:SAAS00016154}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000256|SAAS:SAAS00088701};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanoculleus; environmental samples.;" source="Methanoculleus sp. CAG:1088.;"
Glutamate--tRNA ligase Tax=Methanoculleus sp. CAG:1088 RepID=R7PZ57_9EURY
S_p2_S4_coassembly_k141_3645155_13
unknown

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comp(8605..9105)
DNA (501bp) protein (167aa)

This feature has no annotations

S_p2_S4_coassembly_k141_3645155_14
unknown

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comp(9102..9812)
DNA (711bp) protein (237aa)

This feature has no annotations

S_p2_S4_coassembly_k141_3645155_15
AR5, Aenigmarchaeota, DPANN, Archaea

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9837..11915
DNA (2079bp) protein (693aa)
Peptidase S8/S53 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
hypothetical protein
Tax=AR5
S_p2_S4_coassembly_k141_3645155_16
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

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11941..12837
DNA (897bp) protein (299aa)
Nop58p-like protein pre mRNA splicing protein {ECO:0000313|EMBL:KKR78011.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_40_9.;"
hypothetical protein; K14564 nucleolar protein 56 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
C/D box methylation guide ribonucleoprotein complex aNOP56 subunit
S_p2_S4_coassembly_k141_3645155_17
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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12834..13505
DNA (672bp) protein (224aa)
fibrillarin; K04795 fibrillarin-like pre-rRNA processing protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
fibrillarin
Tax=RBG_13_Woesearchaeota_36_6_curated
S_p2_S4_coassembly_k141_3645155_18
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

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13570..14445
DNA (876bp) protein (292aa)
Pyridoxal biosynthesis lyase PdxS Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=PDXS_DICT6
pyridoxal biosynthesis lyase PdxS
Tax=RBG_16_Actinobacteria_68_21_curated
S_p2_S4_coassembly_k141_3645155_19
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

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14445..15011
DNA (567bp) protein (189aa)
glutamine amidotransferase (EC:2.6.-.-)
Glutamine amidotransferase subunit PdxT Tax=uncultured candidate division OP1 bacterium RepID=H5SJJ5_9BACT
Tax=RBG_16_KB1_OP1_55_9_curated
S_p2_S4_coassembly_k141_3645155_20

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15045..15281
DNA (237bp) protein (79aa)
YruB family glutaredoxin-like protein {ECO:0000313|EMBL:KHO49033.1}; species="Archaea.;" source="archaeon GW2011_AR9.;"
Glutaredoxin-like protein, YruB-family bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
YruB family glutaredoxin-like protein
S_p2_S4_coassembly_k141_3645155_21

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comp(15346..16320)
DNA (975bp) protein (325aa)
Thioredoxin reductase (trxB-3); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Thioredoxin reductase NADPH {ECO:0000313|EMBL:KHO46790.1}; EC=1.8.1.9 {ECO:0000313|EMBL:KHO46790.1};; species="Archaea.;" source="archaeon GW2011_AR3.;"
Thioredoxin reductase TrxB-3
S_p2_S4_coassembly_k141_3645155_22

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comp(16340..17089)
DNA (750bp) protein (250aa)
sufC; putative ATP-dependent transporter SufC; K09013 Fe-S cluster assembly ATP-binding protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46101.1}; species="Archaea.;" source="archaeon GW2011_AR3.;"
FeS assembly ATPase SufC
S_p2_S4_coassembly_k141_3645155_23
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

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comp(17079..17471)
DNA (393bp) protein (131aa)
SUF system FeS assembly protein, NifU family Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AUE0_HERA2
NifU family SUF system FeS assembly protein
SUF system FeS assembly protein, NifU family {ECO:0000313|EMBL:ABX03059.1}; species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
S_p2_S4_coassembly_k141_3645155_24
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(17479..18714)
DNA (1236bp) protein (412aa)
sufS; cysteine desulfurase SufS (EC:2.8.1.7); K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
cysteine desulfurase SufS
Tax=AR5
S_p2_S4_coassembly_k141_3645155_25
GWA1_OD1_36_12, Parcubacteria, Bacteria

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comp(18686..19480)
DNA (795bp) protein (265aa)
FeS assembly protein SufD Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CY41_TRURR bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
SufBD protein {ECO:0000313|EMBL:KKP92457.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_36_12.;"
FeS assembly protein SufD
S_p2_S4_coassembly_k141_3645155_26
GWA1_Berkelbacteria_36_10, Berkelbacteria, Bacteria

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comp(19477..20865)
DNA (1389bp) protein (463aa)
FeS assembly protein SufB {ECO:0000313|EMBL:KKQ17612.1}; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA1_36_9.;"
FeS assembly protein SufB; K09014 Fe-S cluster assembly protein SufB bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
FeS assembly protein SufB
S_p2_S4_coassembly_k141_3645155_27
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(20912..21166)
DNA (255bp) protein (85aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2AR66_9BACT
hypothetical protein
Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
S_p2_S4_coassembly_k141_3645155_28

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comp(21215..21469)
DNA (255bp) protein (85aa)
ferredoxin; K05337 ferredoxin bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ferredoxin {ECO:0000313|EMBL:KHO45399.1}; species="Archaea.;" source="archaeon GW2011_AR3.;"
4fe-4S ferredoxin IroN-sulfur binding domaiN-containing protein
S_p2_S4_coassembly_k141_3645155_29

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comp(21479..22597)
DNA (1119bp) protein (373aa)
glutamate dehydrogenase (NADP)+ (EC:1.4.1.3)
Glutamate dehydrogenase (NAD(P)+) bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; species="Archaea.;" source="archaeon GW2011_AR5.;"
S_p2_S4_coassembly_k141_3645155_30

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comp(22676..23278)
DNA (603bp) protein (201aa)
Methylase involved in ubiquinone/menaquinone biosynthesis Tax=Clostridium termitidis CT1112 RepID=S0FXU6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KHO49675.1}; species="Archaea.;" source="archaeon GW2011_AR9.;"
type 11 methyltransferase
Displaying items 1-30 of 84 in total

View Taxonomy