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OR_07232018_dam_0_1um_scaffold_172

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_172_1
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..827)
DNA (825bp) protein (275aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X324_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDW93300.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
OR_07232018_dam_0_1um_scaffold_172_2
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

850..3603
DNA (2754bp) protein (918aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015000}; EC=2.7.7.42 {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015004};; Glutamine-synthase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; [Glutamate--ammonia-ligase] adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
(glutamate--ammonia-ligase) adenylyltransferase (EC:2.7.7.42)
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X325_THIK1
OR_07232018_dam_0_1um_scaffold_172_3
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3912..5609
DNA (1698bp) protein (566aa)
putative NADH dehydrogenase (quinone) (EC:1.6.99.5)
Putative NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:CAZ86886.1}; EC=1.6.99.5 {ECO:0000313|EMBL:CAZ86886.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Putative NADH dehydrogenase (Quinone) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQJ5_THIA3
OR_07232018_dam_0_1um_scaffold_172_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5626..6387
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFS4_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64923.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
OR_07232018_dam_0_1um_scaffold_172_5
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6372..9485
DNA (3114bp) protein (1038aa)
UPF0753 protein Tint_0113 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X328_THIK1
UPF0753 protein Tint_0113 {ECO:0000256|HAMAP-Rule:MF_01871}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_172_6
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9482..9808
DNA (327bp) protein (109aa)
Nitrogen regulatory protein P-II n=2 Tax=Thiomonas RepID=D5X329_THIK1
putative Nitrogen regulatory protein P-II GlnB
Putative Nitrogen regulatory protein P-II GlnB {ECO:0000313|EMBL:CAZ86889.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_172_7
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10107..11528
DNA (1422bp) protein (474aa)
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
Ribulose bisphosphate carboxylase large chain {ECO:0000256|HAMAP-Rule:MF_01338}; Short=RuBisCO large subunit {ECO:0000256|HAMAP-Rule:MF_01338};; EC=4.1.1.39 {ECO:0000256|HAMAP-Rule:MF_01338, ECO:0000313|EMBL:CAZ86891.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Ribulose bisphosphate carboxylase large chain n=3 Tax=Thiomonas RepID=RBL1_THIK1
OR_07232018_dam_0_1um_scaffold_172_8
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11600..11929
DNA (330bp) protein (110aa)
cbbS; Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (RubisCO) (EC:4.1.1.39)
Ribulose bisphosphate carboxylase/oxygenase small subunit {ECO:0000313|EMBL:AAD02446.1}; Ribulose-bisphosphate carboxylase {ECO:0000313|EMBL:ADG29529.1}; EC=4.1.1.39 {ECO:0000313|EMBL:ADG29529.1};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (RubisCO) n=3 Tax=Thiomonas RepID=D6CQK1_THIA3
OR_07232018_dam_0_1um_scaffold_172_9
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12699..14753
DNA (2055bp) protein (685aa)
Carboxysome shell protein CsoS2 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X332_THIK1
carboxysome shell protein
Carboxysome shell protein CsoS2 {ECO:0000313|EMBL:ADG29530.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_172_10
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14770..16335
DNA (1566bp) protein (522aa)
Carboxysome shell carbonic anhydrase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X333_THIK1
carboxysome shell carbonic anhydrase
Carboxysome shell carbonic anhydrase {ECO:0000313|EMBL:ADG29531.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_172_11
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16346..16600
DNA (255bp) protein (85aa)
Carboxysome polypeptide n=2 Tax=Thiomonas RepID=D6CQK4_THIA3
carboxysome peptide A
Carboxysome polypeptide {ECO:0000313|EMBL:CAZ86895.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_172_12
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16600..16845
DNA (246bp) protein (82aa)
Carboxysome polypeptide n=2 Tax=Thiomonas RepID=D6CQK5_THIA3
Carboxysome polypeptide
Carboxysome polypeptide {ECO:0000313|EMBL:CAZ86896.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_172_13
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16950..17246
DNA (297bp) protein (99aa)
Major carboxysome shell protein n=2 Tax=Thiomonas RepID=D6CQK6_THIA3
microcompartments protein
Carboxysome structural polypeptide {ECO:0000313|EMBL:AAD02451.1}; CsoS1C {ECO:0000313|EMBL:AAC24754.1}; Microcompartments protein {ECO:0000313|EMBL:ADG29534.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_172_14
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17291..17587
DNA (297bp) protein (99aa)
Major carboxysome shell protein n=2 Tax=Thiomonas RepID=D6CQK7_THIA3
microcompartments protein
Carboxysome structural polypeptide {ECO:0000313|EMBL:AAD02452.1}; CsoS1A {ECO:0000313|EMBL:AAC24755.1}; Microcompartments protein {ECO:0000313|EMBL:ADG29535.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_172_15
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17672..18010
DNA (339bp) protein (113aa)
Carboxysome structural polypeptide n=2 Tax=Thiomonas RepID=D6CQK8_THIA3
microcompartments protein
Microcompartments protein {ECO:0000313|EMBL:ADG29536.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_172_16
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18025..18456
DNA (432bp) protein (144aa)
Putative Bacterioferritin (Cytochrome b1) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQK9_THIA3
putative Bacterioferritin (cytochrome b1)
Putative Bacterioferritin (Cytochrome b1) {ECO:0000313|EMBL:CAZ86900.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_172_17
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18449..18715
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X340_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG29538.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_172_18
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18719..19357
DNA (639bp) protein (213aa)
Cobyrinic acid ac-diamide synthase n=2 Tax=Thiomonas RepID=D5X341_THIK1
putative Cobyrinic acid a,c-diamide synthase cbiA
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:ADG29539.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_172_19
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19354..19587
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X342_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG29540.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_172_20
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19646..20578
DNA (933bp) protein (311aa)
CbbQ/NirQ/NorQ domain protein n=2 Tax=Thiomonas RepID=D5X343_THIK1
cbbQ1; post-translational RubisCO activator CbbQ
Post-translational RubisCO activator CbbQ {ECO:0000313|EMBL:CAZ86904.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_172_21
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20642..22999
DNA (2358bp) protein (786aa)
von Willebrand factor type A n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X344_THIK1
von Willebrand factor type A {ECO:0000313|EMBL:ADG29542.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_172_22
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23013..23642
DNA (630bp) protein (210aa)
Microcompartments protein n=2 Tax=Thiomonas RepID=D5X345_THIK1
microcompartments protein
Microcompartments protein {ECO:0000313|EMBL:ADG29543.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_172_23
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23660..24484
DNA (825bp) protein (275aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X346_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG29544.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_172_24
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24541..24843
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQL7_THIA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ86908.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_172_25
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24904..25848
DNA (945bp) protein (315aa)
Transaldolase {ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Transaldolase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X348_THIK1
transaldolase
OR_07232018_dam_0_1um_scaffold_172_26
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25937..26590
DNA (654bp) protein (218aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X349_THIK1
hypothetical protein
OR_07232018_dam_0_1um_scaffold_172_27
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26558..27562)
DNA (1005bp) protein (335aa)
Transcriptional regulator, LysR family n=2 Tax=Thiomonas RepID=D5X350_THIK1
cbbR1; HTH-type transcriptional regulator cbbR (RuBisCO operon transcriptional regulator)
HTH-type transcriptional regulator cbbR (RuBisCO operon transcriptional regulator) {ECO:0000313|EMBL:CAZ86911.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_172_28
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27918..28997
DNA (1080bp) protein (360aa)
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Fructose-1,6-bisphosphatase class 1 n=2 Tax=Thiomonas RepID=D5X351_THIK1
inositol phosphatase/fructose-16-bisphosphatase
OR_07232018_dam_0_1um_scaffold_172_29
unknown

Not on your lists

28997..29125
DNA (129bp) protein (43aa)

This feature has no annotations

OR_07232018_dam_0_1um_scaffold_172_30
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29160..30035
DNA (876bp) protein (292aa)
cbbP; Phosphoribulokinase (Phosphopentokinase) (PRKase) (PRK) (EC:2.7.1.19)
Phosphoribulokinase {ECO:0000256|RuleBase:RU004082}; EC=2.7.1.19 {ECO:0000256|RuleBase:RU004082};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Phosphoribulokinase n=2 Tax=Thiomonas RepID=D5X352_THIK1
Displaying items 1-30 of 39 in total

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