ggKbase home page

OR_07232018_dam_0_1um_scaffold_224

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_224_1
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1211
DNA (1209bp) protein (403aa)
Major facilitator superfamily MFS_1 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WYQ4_THIK1
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADG32231.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_224_2
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1262..2320)
DNA (1059bp) protein (353aa)
Thiosulfate dehydrogenase; EC=1.8.2.2;; Tetrathionate synthase; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Cytochrome c class I n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WYQ5_THIK1
cytochrome c class I
OR_07232018_dam_0_1um_scaffold_224_3
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2266..2784)
DNA (519bp) protein (173aa)
Cytochrome c class I n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WYQ6_THIK1
cytochrome c class I
Thiosulfate dehydrogenase electron acceptor; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_224_trna_1
unknown

Not on your lists

comp(3527..3599)
DNA (73bp)
transferRNA Phe
OR_07232018_dam_0_1um_scaffold_224_4
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3708..4427)
DNA (720bp) protein (240aa)
Putative two-component response regulator containing Fis family n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CNC7_THIA3
putative two-component response regulator containing Fis family
Putative two-component response regulator containing Fis family {ECO:0000313|EMBL:CAZ90055.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_224_5
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4596..6893)
DNA (2298bp) protein (766aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative two-component sensor kinase (EC:2.7.13.3)
Putative two-component sensor kinase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CNC6_THIA3
OR_07232018_dam_0_1um_scaffold_224_6
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6977..7567)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CNC5_THIA3
conserved hypothetical protein; putative exported protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ90053.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_224_7
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7564..9003)
DNA (1440bp) protein (480aa)
putative rsmB (sun protein) (Fmu, rRNA SAM-dependent methyltransferase) (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Putative rsmB (Sun protein) (Fmu, rRNA SAM-dependent methyltransferase) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CNC4_THIA3
OR_07232018_dam_0_1um_scaffold_224_8
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9040..9504)
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Thiomonas RepID=D6CNC3_THIA3
conserved hypothetical protein; putative exported protein
Uncharacterized protein {ECO:0000313|EMBL:ADG32240.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_224_9
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9660..10952)
DNA (1293bp) protein (431aa)
Flavocytochrome c sulphide dehydrogenase flavin-binding protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WYR2_THIK1
flavocytochrome c sulfide dehydrogenase flavin-binding protein
Flavocytochrome c sulphide dehydrogenase flavin-binding protein {ECO:0000313|EMBL:ADG32239.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_224_10
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10966..11268)
DNA (303bp) protein (101aa)
Putative Cytochrome subunit of sulfide dehydrogenase (FC) (FCSD) (Flavocytochrome c cytochrome subunit) FccA n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CNC1_THIA3
putative Cytochrome subunit of sulfide dehydrogenase (FC) (FCSD) (Flavocytochrome c cytochrome subunit) FccA
Putative Cytochrome subunit of sulfide dehydrogenase (FC) (FCSD) (Flavocytochrome c cytochrome subunit) FccA {ECO:0000313|EMBL:CAZ90049.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_224_11
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11516..11983)
DNA (468bp) protein (156aa)
Uncharacterized protein n=2 Tax=Thiomonas RepID=D6CNB9_THIA3
conserved hypothetical protein; putative exported protein
Uncharacterized protein {ECO:0000313|EMBL:ADG32237.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_224_12
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12004..12303)
DNA (300bp) protein (100aa)
Uncharacterized protein n=2 Tax=Thiomonas RepID=D6CNB8_THIA3
hypothetical protein; putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:ADG32236.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_224_13
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12318..13610)
DNA (1293bp) protein (431aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Gamma-glutamyl phosphate reductase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WYQ8_THIK1
gamma-glutamyl phosphate reductase
OR_07232018_dam_0_1um_scaffold_224_14
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13771..14190
DNA (420bp) protein (140aa)
Uncharacterized protein n=2 Tax=Thiomonas RepID=D6CNB6_THIA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG32234.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_224_15
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14600..15520)
DNA (921bp) protein (307aa)
RuBisCO operon transcriptional regulator n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CKN3_THIA3
rbcR; RuBisCO operon transcriptional regulator
RuBisCO operon transcriptional regulator {ECO:0000313|EMBL:CAZ87501.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_224_16
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15673..17313
DNA (1641bp) protein (547aa)
NADH:ubiquinone oxidoreductase subunit 5 (Chain L)/multisubunit Na+/H+ antiporter, MnhA subunit n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0H0Q0_9GAMM
NADH:ubiquinone oxidoreductase subunit L/multisubunit Na+/H+ antiporter, MnhA subunit
NADH:ubiquinone oxidoreductase subunit 5 (Chain L)/multisubunit Na+/H+ antiporter, MnhA subunit {ECO:0000313|EMBL:AGA91637.1}; Flags: Precursor;; TaxID=765912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
OR_07232018_dam_0_1um_scaffold_224_17
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17315..19795
DNA (2481bp) protein (827aa)
UPF0753 protein Thimo_2946 n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0GY02_9GAMM
UPF0753 protein Thimo_2946 {ECO:0000256|HAMAP-Rule:MF_01871}; TaxID=765912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_224_18

Not on your lists

comp(20098..21180)
DNA (1083bp) protein (361aa)
ADP-ribosylation/Crystallin J1 {ECO:0000313|EMBL:EQD57243.1}; EC=3.2.2.19 {ECO:0000313|EMBL:EQD57243.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ADP-ribosylation/Crystallin J1 n=1 Tax=mine drainage metagenome RepID=T1AL83_9ZZZZ
ADP-ribosylation/crystallin J1
OR_07232018_dam_0_1um_scaffold_224_19
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21408..21692)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PQM7_9ZZZZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31810.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_224_20
unknown

Not on your lists

comp(21812..21997)
DNA (186bp) protein (62aa)

This feature has no annotations

OR_07232018_dam_0_1um_scaffold_224_21
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22111..22542
DNA (432bp) protein (144aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5B5_THIK1
BadM/Rrf2 family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:ADG31808.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_224_22

Not on your lists

comp(22624..23559)
DNA (936bp) protein (312aa)
Putative DNA-3-methyladenine glycosylase II {ECO:0000313|EMBL:CBH97236.1}; EC=3.2.2.21 {ECO:0000313|EMBL:CBH97236.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative DNA-3-methyladenine glycosylase II n=1 Tax=mine drainage metagenome RepID=E6PQN1_9ZZZZ
HhH-GPD family protein
OR_07232018_dam_0_1um_scaffold_224_23
Prevotella sp. oral taxon 306, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23568..23930)
DNA (363bp) protein (121aa)
PF04343 family protein n=1 Tax=Prevotella sp. oral taxon 306 str. F0472 RepID=I0TDB7_9BACT
PF04343 family protein {ECO:0000313|EMBL:EID33620.1}; TaxID=1095752 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella sp. oral taxon 306 str. F0472.;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_224_24

Not on your lists

24023..24562
DNA (540bp) protein (180aa)
Putative Hemerythrin n=1 Tax=mine drainage metagenome RepID=E6PQN4_9ZZZZ
Putative Hemerythrin {ECO:0000313|EMBL:CBH97239.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
conserved hypothetical protein Hemerythrin-like protein
OR_07232018_dam_0_1um_scaffold_224_25

Not on your lists

comp(24635..26719)
DNA (2085bp) protein (695aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003816B4B
Sulphatase-modifying factor domain protein {ECO:0000313|EMBL:EQD57242.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_224_26
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27056..28870
DNA (1815bp) protein (605aa)
7TM domain sensor diguanylate cyclase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X2W0_THIK1
7TM domain sensor diguanylate cyclase
7TM domain sensor diguanylate cyclase {ECO:0000313|EMBL:ADG29458.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_224_27
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28957..29313
DNA (357bp) protein (119aa)
Putative Cytochrome c n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVM5_THIA3
putative Cytochrome c
Putative Cytochrome c {ECO:0000313|EMBL:CAZ86806.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_224_28
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29324..29761)
DNA (438bp) protein (146aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVM4_THIA3
exbD; Biopolymer transport protein ExbD/TolR
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:CAZ86805.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_224_29
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29774..30436)
DNA (663bp) protein (221aa)
MotA/TolQ/ExbB proton channel n=2 Tax=Thiomonas RepID=D5X2V7_THIK1
exbB; Biopolymer transport ExbB protein
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:ADG29455.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Displaying items 1-30 of 44 in total

View Taxonomy