ggKbase home page

OR_07232018_dam_0_1um_scaffold_236

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_236_1
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..3475
DNA (3474bp) protein (1158aa)
Diguanylate cyclase/phosphodiesterase with GAF sensor n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X0B3_THIK1
Diguanylate cyclase/phosphodiesterase with GAF sensor {ECO:0000313|EMBL:ADG30559.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
GAF sensor-containing diguanylate cyclase/phosphodiesterase
OR_07232018_dam_0_1um_scaffold_236_2
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3596..5236)
DNA (1641bp) protein (547aa)
putative GGDEF family protein, diguanylate cyclase domain (EC:2.7.7.65)
Putative GGDEF family protein, diguanylate cyclase domain {ECO:0000313|EMBL:CAZ88176.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CAZ88176.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Putative GGDEF family protein, diguanylate cyclase domain n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQ96_THIA3
OR_07232018_dam_0_1um_scaffold_236_3
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5298..5621)
DNA (324bp) protein (108aa)
Type III secretion exporter n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X0A9_THIK1
Uncharacterized protein {ECO:0000313|EMBL:CDW95315.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
type III secretion exporter
OR_07232018_dam_0_1um_scaffold_236_4
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5618..6883)
DNA (1266bp) protein (422aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X0A8_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG30554.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_236_5
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6899..7354)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQ93_THIA3
hypothetical protein; putative exported protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ88173.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_236_6
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7386..7601)
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X0A6_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG30552.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_236_7
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7627..8370)
DNA (744bp) protein (248aa)
Motility protein A n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQ91_THIA3
Motility protein A {ECO:0000313|EMBL:CDW95307.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
motA; Motility protein A
OR_07232018_dam_0_1um_scaffold_236_8
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8413..9141)
DNA (729bp) protein (243aa)
RNA polymerase sigma factor for flagellar operon (Sigma-F factor) (Sigma-27) (Sigma-28) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQ90_THIA3
RNA polymerase sigma factor for flagellar operon {ECO:0000313|EMBL:CDW95306.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
fliA; RNA polymerase sigma factor for flagellar operon (Sigma-F factor) (Sigma-27) (Sigma-28)
OR_07232018_dam_0_1um_scaffold_236_9
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9176..10024)
DNA (849bp) protein (283aa)
Site-determining protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X0A3_THIK1
cobyrinic acid ac-diamide synthase
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_236_10
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10047..11453)
DNA (1407bp) protein (469aa)
Putative Flagellar GTP-binding protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQ88_THIA3
putative Flagellar GTP-binding protein
Putative Flagellar GTP-binding protein {ECO:0000313|EMBL:CDW95304.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
OR_07232018_dam_0_1um_scaffold_236_11
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11471..13573)
DNA (2103bp) protein (701aa)
Flagellar biosynthesis protein flhA n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQ87_THIA3
Putative flagellar export pore protein {ECO:0000313|EMBL:CDW95303.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
flhA; Flagellar biosynthesis protein flhA
OR_07232018_dam_0_1um_scaffold_236_12
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13580..14701)
DNA (1122bp) protein (374aa)
Flagellar biosynthetic protein FlhB n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X0A0_THIK1
flagellar biosynthetic protein FlhB
Flagellar biosynthetic protein FlhB {ECO:0000313|EMBL:ADG30546.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_236_13
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14712..15503)
DNA (792bp) protein (264aa)
Flagellar biosynthetic protein fliR n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQ85_THIA3
Flagellar biosynthetic protein fliR {ECO:0000256|RuleBase:RU003842}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
fliR; Flagellar biosynthetic protein FliR
OR_07232018_dam_0_1um_scaffold_236_14
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15520..15795)
DNA (276bp) protein (92aa)
Flagellar biosynthetic protein FliQ n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X098_THIK1
flagellar biosynthetic protein FliQ
Flagellar biosynthetic protein FliQ {ECO:0000313|EMBL:ADG30544.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_236_15
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15809..16576)
DNA (768bp) protein (256aa)
Flagellar biosynthetic protein FliP n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X097_THIK1
Flagellar biosynthesis protein {ECO:0000313|EMBL:CDW95297.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
flagellar biosynthetic protein FliP
OR_07232018_dam_0_1um_scaffold_236_16
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16573..16959)
DNA (387bp) protein (129aa)
Flagellar biosynthesis protein, FliO n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQ82_THIA3
fliO; flagellar biosynthesis protein, FliO
Flagellar biosynthetic protein FliO {ECO:0000313|EMBL:ADG30542.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_236_17
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17148..17531
DNA (384bp) protein (128aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X095_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG30541.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_236_18
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17561..18886)
DNA (1326bp) protein (442aa)
rkpK; UDP-glucose 6-dehydrogenase (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) (EC:1.1.1.22)
UDP-glucose 6-dehydrogenase (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) {ECO:0000313|EMBL:CAZ88159.1}; EC=1.1.1.22 {ECO:0000313|EMBL:CAZ88159.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
UDP-glucose 6-dehydrogenase (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQ79_THIA3
OR_07232018_dam_0_1um_scaffold_236_19
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19071..21029
DNA (1959bp) protein (653aa)
Poly-beta-hydroxybutyrate polymerase domain protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZX2_THIK1
Poly-beta-hydroxybutyrate polymerase domain protein {ECO:0000313|EMBL:ADG30538.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
poly-beta-hydroxybutyrate polymerase domain-containing protein
OR_07232018_dam_0_1um_scaffold_236_20
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21058..22512
DNA (1455bp) protein (485aa)
Phosphate butyltransferase {ECO:0000313|EMBL:CDW95290.1}; EC=2.3.1.19 {ECO:0000313|EMBL:CDW95290.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
phosphate butyltransferase (EC:2.3.1.19)
Phosphate butyltransferase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQ77_THIA3
OR_07232018_dam_0_1um_scaffold_236_21
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22521..23729
DNA (1209bp) protein (403aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Acetate kinase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZX0_THIK1
acetate kinase
OR_07232018_dam_0_1um_scaffold_236_22
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23745..25172
DNA (1428bp) protein (476aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X231_THIK1
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ADG31177.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_236_23
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25194..27581
DNA (2388bp) protein (796aa)
putative Proton-exporting ATPase (EC:3.6.3.6)
Putative Proton-exporting ATPase {ECO:0000313|EMBL:CAZ88882.1}; EC=3.6.3.6 {ECO:0000313|EMBL:CAZ88882.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Putative Proton-exporting ATPase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUB3_THIA3
OR_07232018_dam_0_1um_scaffold_236_24
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27592..28143
DNA (552bp) protein (184aa)
Putative alpha/beta-Hydrolase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUB2_THIA3
putative alpha/beta-Hydrolase
Putative alpha/beta-Hydrolase {ECO:0000313|EMBL:CDW95158.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
OR_07232018_dam_0_1um_scaffold_236_25
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28171..28350)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CTY8_THIA3
conserved hypothetical protein; putative exported protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ88757.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Displaying 25 items

View Taxonomy